YRC Public Data Repository - Protein Structure Prediction

Protein:	TYPH_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TYPH_SHEON.

Description	E-value	Query Range	Subject Range
gi\|15024496, gi\|... - gi\|15894824\|ref\|NP_348173.1\| pyrimidine-nucleoside phosphorylase [Clostridium acetobutylicum ATCC 82... gi\|25286848 - pir\|\|F97090 pyrimidine-nucleoside phosphorylase [imported] - Clostridium acetobutylicum	476.0	[0..2]	[439..1]
gi\|6729724, gi\|4... - gi\|6729724\|pdb\|1BRW\|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside Phosphorylase In A Clo...	471.0	[0..2]	[438..1]
gi\|28211618, gi\|... - gi\|28211618\|ref\|NP_782562.1\| pyrimidine-nucleoside phosphorylase [Clostridium tetani E88], gi\|282040...	470.0	[0..2]	[439..3]
PDP_STAHJ - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pdp PE=3 SV=...	470.0	[0..2]	[439..1]
gi\|14247909, gi\|... - gi\|15925126\|ref\|NP_372660.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|13701930, gi\|... - gi\|15927710\|ref\|NP_375243.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|253733030, gi... - gi\|253733030\|ref\|ZP_04867195.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... gi\|25286849 - pir\|\|E90007 pyrimidine nucleoside phosphorylase [imported] - Staphylococcus aureus (strain N315)	469.0	[0..2]	[439..14]
gi\|91228290, gi\|... - gi\|91228290\|ref\|ZP_01262226.1\| thymidine phosphorylase [Vibrio alginolyticus 12G01], gi\|91188167\|gb\|...	469.0	[0..1]	[443..1]
gi\|56380689, gi\|... - gi\|56420847\|ref\|YP_148165.1\| pyrimidine-nucleoside phosphorylase (PYNP) [Geobacillus kaustophilus HT...	469.0	[0..2]	[438..1]
gi\|195992570, gi... - gi\|196035031\|ref\|ZP_03102438.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus W], gi\|19599257... gi\|52141406, gi\|... - gi\|52141406\|ref\|YP_085422.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus E33L], gi\|51974875... gi\|118418513, gi... - gi\|118479288\|ref\|YP_896439.1\| pyrimidine-nucleoside phosphorylase [Bacillus thuringiensis str. Al Ha... gi\|221241594, gi... - gi\|222097536\|ref\|YP_002531593.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus Q1], gi\|221241... gi\|218905225, gi... - gi\|218905225\|ref\|YP_002453059.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus AH820], gi\|218... gi\|206976316, gi... - gi\|206976316\|ref\|ZP_03237224.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus H3081.97], gi\|2... gi\|196047235, gi... - gi\|196047235\|ref\|ZP_03114451.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus 03BB108], gi\|19... gi\|196038795, gi... - gi\|196038795\|ref\|ZP_03106103.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus NVH0597-99], gi...	469.0	[0..2]	[439..1]
gi\|77977213, gi\|... - gi\|77977213\|ref\|ZP_00832668.1\| COG0213: Thymidine phosphorylase [Yersinia intermedia ATCC 29909], gi...	469.0	[0..1]	[439..1]
TYPH_PECAS - Thymidine phosphorylase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=deoA PE=... TYPH_ERWCT - Thymidine phosphorylase OS=Erwinia carotovora subsp. atroseptica GN=deoA PE=3 SV=1	469.0	[0..1]	[441..1]

Back

Predicted Domain #1

Region A:
Residues: [1-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLAQEIIRK KRNGLVLSAE EIQFFVKGIT TNAVSEGQIA ALGMAVYFND MNMDERIALT  60
   61 TAMRDSGTVL NWQSLNLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT 120
  121 GGTLDKFDAI PGYQTEPSSE LFRKVVKDVG VAIIGQTGDL VPADKRFYSI RDNTATVESI 180
  181 SLITASILSK KLACSLDALA MDVKVGSGAF MPTYEASEEL ARSIAAVANG AGTKTTALLT 240
  241 DMNQVLASCA GNALEVKEAI DFLTGAYRNP RLYAVTMGLC AEMLLLGGLA TDEADARAKL 300
  301 NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADTQGY AHSMDTRELG 360
  361 LAVVTLGGGR RKPGDELDYS VGLTQVCALG DKIDASTPIA VIHAQSEEAF AQAEDAVKKA 420
  421 IHIDEIAPEK TPEIYAYIRA TDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	1azyA
Description:	Thymidine phosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring pentosyl groups	2.4903133160045	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.43457627723298	bayes_pls_golite062009
catalytic activity	1.99182579317454	bayes_pls_golite062009
transferase activity	1.94624792134779	bayes_pls_golite062009
binding	1.22159759850364	bayes_pls_golite062009
protein binding	0.355523160607983	bayes_pls_golite062009
anthranilate phosphoribosyltransferase activity	0.28144891326436	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: