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Protein Overview: gi|24372461, gi|...

General Information:
Name(s) found: gi|24372461 [NCBI NR]
gi|24346447 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372461|ref|NP_716503.1| polyA polymerase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346447|gb|AAN53948.1|AE015532_8 polyA polymerase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 438 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [ISSLink to PubMed article]
    Molecular Function: polynucleotide adenylyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVPRDAHS ISRKQISENA LKVLYRLNKA GFQAYLVGGG VRDLLLGLEP KDFDVVTNAT  60
   61 PEEIKKLFRN CRVVGRRFRL AHIVFGRDVI EVATFRGHHG ESNEKISKAN AEGRLLRDNV 120
  121 YGEIDEDAER RDFTVNALYY DISDYSIRSY GGGMEDLKAG TLRLIGDPET RYREDPVRML 180
  181 RAVRFATKLS MTIDEVTAKP IKQLAPLLKD IPAARMYEEV LKLFFAGKAV ANFDMMQEYK 240
  241 LFAPLFPQVD ALLKEAPKGP AMKMVQAIMK STDDRVNEDK PVTPSFFYAA ILWYPLRQRA 300
  301 EDIAVESGLT LYDAFFAAMG DVMEQQCQTI SIPRRFSTPA KDIWQLQLRF ERSQGTRAFK 360
  361 LLEHPKFRAA YDLLLLRGEV EGGNLAKSAA WWQQFVEADE TERLTIARSG NKASGNRNRN 420
  421 TPQRRRRRPS GAKAKAEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..356] PSI-BLAST 71.0 tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain
    2 View Details [357..438] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring phosphorus-containing groups
    		•  2.13977436268217 bayes_pls_golite062009
  • RNA binding
    		•  1.95446539797934 bayes_pls_golite062009
  • transferase activity
    		•  1.58185056077551 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.28424599869932 bayes_pls_golite062009
  • catalytic activity
    		•  0.75232920999699 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  0.747086661208511 bayes_pls_golite062009
  • tRNA binding
    		•  0.671378805940772 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.56250895409788 bayes_pls_golite062009
  • binding
    		•  0.248197954076327 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle