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Protein Overview: gi|24372284, gi|...

General Information:
Name(s) found: gi|24372284 [NCBI NR]
gi|24346214 [NCBI NR]
Description(s) found:
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  • gi|24372284|ref|NP_716326.1| aldose 1-epimerase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346214|gb|AAN53771.1|AE015515_4 aldose 1-epimerase [Shewanella oneidensis MR-1] [NCBI NR]
  • aldose 1-epimerase [Shewanella oneidensis MR-1]gi|24346214|gb|AAN53771.1| aldose 1-epimerase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • aldose 1-epimerase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 343 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: galactose metabolic process [ISSLink to PubMed article]
    Molecular Function: aldose 1-epimerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFSVLDPW TDPRGGEIER VRIDNGIIAL EVLSLGGIIR ALWTPDKQGE RANIVLGCDS  60
   61 AEDYLTQNAH LGAIVGRFAN RIALGKLQHQ GQTYQLDINQ ASNCLHGGRE GFNRKNWHLG 120
  121 QLPDGVRLSL VSPDGDMGFP GNCTVQLDYR LAANNLYVEI LASVDKPCPV SLTQHSYFNL 180
  181 DGTSNNHQHQ IQIDATRYLT MNEVGIPMGI AEVKDSIFDL TQGVTLGEKL HDPTLASTRG 240
  241 YDHCYLMDNL DGSLRRFGCL SSPVSGRAMT VFTNQPGVQL YCANFLAGTL GRNQQRLNQY 300
  301 QGVCIEPQML PDSPNQTQLG QDVWLVPGKI YHHISRYQFD TES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..343] PSI-BLAST 107.0 Crystal structure of apo human galactose mutarotase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • aldose 1-epimerase activity
    		•  2.85100059704396 bayes_pls_golite062009
  • catalytic activity
    		•  0.770933849734279 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.68102716507433 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.473636146090495 bayes_pls_golite062009
  • UDP-glucose 4-epimerase activity
    		•  0.46846097606394 bayes_pls_golite062009
  • binding
    		•  0.381228414514023 bayes_pls_golite062009
  • isomerase activity
    		•  0.106573908779409 bayes_pls_golite062009
  • protein binding
    		•  0.078592895113726 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle