YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: DCUP_SHEON

General Information:
Name(s) found: DCUP_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • Uroporphyrinogen decarboxylase OS=Shewanella oneidensis (strain MR-1) GN=hemE PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 354 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: porphyrin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: uroporphyrinogen decarboxylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELKNDRYL RALLKQPVDM TPVWMMRQAG RYLPEYKATR AQAGDFMSLC KNHELACEVT  60
   61 LQPLRRYELD AAILFSDILT VPDAMGLGLY FEAGEGPRFE RPTDTIDAIK KLSIPDPEDE 120
  121 LGYVMKAVST IRRELNGQVP LIGFSGSPWT LATYMVEGGS SKTFEKIKKM AYAEPAALHM 180
  181 LLDKLADSVT LYLNAQVANG AQSLMIFDSW GGALSHTAYR EFSLRYMQKI VDGLTRFADG 240
  241 RQVPVTLFTK GGGLWLEAMA ETGCDALGLD WTVDIADARR RVGHKVALQG NMDPSMLYAP 300
  301 IPRIEEEVGQ ILAGYGEGTG HVFNLGHGIH QHVDPEHAGA FIKAVHAQSK QYHK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..354] PSI-BLAST 126.0 Uroporphyrinogen Decarboxylase in complex with coproporphyrinogen-I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • uroporphyrinogen decarboxylase activity
    		•  4.48282084722609 bayes_pls_golite062009
  • catalytic activity
    		•  2.37862248560593 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.67493268854029 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  1.54242506764415 bayes_pls_golite062009
  • binding
    		•  1.19577203030346 bayes_pls_golite062009
  • transferase activity
    		•  1.11861612545715 bayes_pls_golite062009
  • protein binding
    		•  0.30230496242508 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle