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Protein Overview: gi|24345839, gi|...

General Information:
Name(s) found: gi|24371984 [NCBI NR]
gi|24345839 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24371984|ref|NP_716026.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345839|gb|AAN53471.1|AE015487_5 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 429 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: site-specific recombinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKKNMTNT ALVSLTNKPL DKPTTLSDSG GLAARATPAK DGKGNNVLWI FRYRMGGRET  60
   61 PQRTIVFGKY PDLKLAGARE KRERCKVWIA DGKDPKTQLE LELSKAVKPL TVAEVLDNWI 120
  121 SEYANGKRVN ASKHKQQFER WIVPHLGSLP LAEIKKPHWI AALKKRSQKY PVAAGYVLRN 180
  181 LQQALKWCAK SGHEFDRSVF DIDLDDIGAK HQAKRSQRLV EDDSWQRLID LLKWIEAGEM 240
  241 LPYYKNLLIL LITFGARTQE LRLATTKEFN FETGVWTVPA EHNKTQAKDQ ARGDSGEIKR 300
  301 PIPDSIKPLL VALCEANKGG YLLGEFKEPT AVSAWGGNIW KKLGHEQKWR LHDLRRTVAT 360
  361 GLNDLGVAPH VVESLLGHSI QGVAGIYNRS HYLPEKRQAL ELWCNRLDEL LSGEDCNVFL 420
  421 LRASNDKRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] MSA 6.997996 View MSA. No confident structure predictions are available.
    2 View Details [106..429] PSI-BLAST 44.39794 SITE-SPECIFIC RECOMBINASE, XERD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structure-specific DNA binding
    		•  2.96794540657137 bayes_pls_golite062009
  • catalytic activity
    		•  1.85476765215403 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.47056442077417 bayes_pls_golite062009
  • DNA binding
    		•  1.08208472364243 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.01945666037816 bayes_pls_golite062009
  • binding
    		•  0.849061082531999 bayes_pls_golite062009
  • protein binding
    		•  0.391840757563427 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle