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Protein Overview: gi|24371979, gi|...

General Information:
Name(s) found: gi|24371979 [NCBI NR]
gi|24345831 [NCBI NR]
Description(s) found:
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  • gi|24371979|ref|NP_716021.1| type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345831|gb|AAN53466.1|AE015486_7 type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • type I restriction-modification system, M subunit [Shewanella oneidensis MR-1]gi|24345831|gb|AAN53466.1| type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 585 amino acids

    Gene Ontology:
    Cellular Component: Type I site-specific deoxyribonuclease complex [ISSLink to PubMed article]
    Biological Process: DNA modification [ISSLink to PubMed article]
    Molecular Function: DNA-methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASEFKDYI FGMMFLKRLS DSFDEAREQV FEYYLAKGKT QVEAEALASD EDEYDSTFYI  60
   61 PEVARWSALK DLKHNIGEAL NTAAEAIEEH NPNLEGVLVS IDFNIKNKLS DNKLRDLLSH 120
  121 FNKYRLRNSD FERPDLLGTA YEYLIKMFAD SAGKKGGEFY TPSEVVQLLV ALLKPHAGMR 180
  181 IYDPTAGSGG MLIQMRNYLA THNENAANLS LYGQEMNLNT WAICKMNMFL HGVQSADIRK 240
  241 GDTLREPKHT IDGSLMTFDR VIANPPFSLS KWGKEDCDKD KYGRFPYGTP PKDSGDLAFV 300
  301 QHMIASTNDD GMVGVVMPHG VLFRGSSEKD IRKGILEDDL LEAVISLPSG LFYGTGIPAC 360
  361 LLIINKQKPS ERQGKVLFIY AELEYHEGKN QNSLRPQDIN KIVTTFDSFS EIKRYSAVVK 420
  421 LKDIRDNDYN LNIRRYADTS PPAEIFDVRA ILHGGIPVRE VENDYIQEEI LKGFDVSCVF 480
  481 EPKLNHASQS TDQQYYQFKA EITTKEQIRP LVENSVEQVK AIEDCATDNS AEQTSTTELA 540
  541 SVTLIVGQFE RWWDKYQVSL HQLDAEMAEA EQVMQGYLKE LGYES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..489] PSI-BLAST 45.154902 No description for 2okcA was found.
    2 View Details [490..585] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-methyltransferase activity
    		•  7.61853880993981 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  7.11249059771057 bayes_pls_golite062009
  • transferase activity
    		•  2.22303238506686 bayes_pls_golite062009
  • methyltransferase activity
    		•  1.75500643076741 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  1.71409699782588 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  1.67663666042395 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • DNA (cytosine-5-)-methyltransferase activity
    		•  0.937171599492037 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.891400969900644 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  0.817509452491588 bayes_pls_golite062009
  • histone methyltransferase activity (H4-R3 specific)
    		•  0.647112128094373 bayes_pls_golite062009
  • protein-arginine omega-N symmetric methyltransferase activity
    		•  0.531263697103486 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.348134584790547 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  0.230719796976667 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle