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Protein Overview: PRPB_SHEON

General Information:
Name(s) found: PRPB_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • 2-methylisocitrate lyase OS=Shewanella oneidensis (strain MR-1) GN=prpB PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 292 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: fermentation [ISSLink to PubMed article]
    Molecular Function: oxo-acid-lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSAGLRFR QALANSKPLQ IVGTTNAYFA LMAEQTGFQA LYLSGAGVAN ASYGLPDLGM  60
   61 TSMNDVLIDA GRITSATQLP LLVDIDTGWG GAFNIARTIK EFEKIGVAAV HMEDQVSQKR 120
  121 CGHRPNKAVV STEEMVDRIK AAVDARTDPN FVIMARTDAV AVEGLEAGIE RAKAYIAAGA 180
  181 DMIFAEALTE LDQYRHFKAQ VKAPILANMT EFGQTQLFNK EELAQAGADM VLYPLGTFRA 240
  241 ANQAALKVMQ ALMNDGHQRN VLDTMQTRAD LYKYLGYHAF EDKLDQLFSQ DK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..292] PSI-BLAST 85.0 2-methylisocitrate lyase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.96882793316847 bayes_pls_golite062009
  • methylisocitrate lyase activity
    		•  2.09739770469711 bayes_pls_golite062009
  • citrate (pro-3S)-lyase activity
    		•  0.86095690814621 bayes_pls_golite062009
  • lyase activity
    		•  0.70986506551964 bayes_pls_golite062009
  • transferase activity
    		•  0.5687068385416 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.404868472347919 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.36217387205482 bayes_pls_golite062009
  • carboxyvinyl-carboxyphosphonate phosphorylmutase activity
    		•  0.2132734143313 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle