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Protein Overview: gi|24371912, gi|...

General Information:
Name(s) found: gi|24371912 [NCBI NR]
gi|24345744 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24371912|ref|NP_715954.1| ornithine decarboxylase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345744|gb|AAN53399.1|AE015479_6 ornithine decarboxylase, inducible [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 720 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: polyamine biosynthetic process [ISSLink to PubMed article]
    Molecular Function: ornithine decarboxylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLKVAASL SVRSCFDIDR EVVNVLTTDF CDVGAAVVSV DDVKDGIVEK IKNTGLKLPI  60
   61 FVSVCCEETF PDDICSSITG VFELCGSNTD FYGKQVETAI KKYEQALLPP FFGTLKKYVE 120
  121 MGNSTFACPG HQGGQFFRKH PVGRQFFDFF GETIFRSDMC NADVKLGDLL IHEGAPLDAQ 180
  181 KYAAKVFNAD KTYFVLNGTS SSNKVATNAL LAKGDLVLFD RNNHKSNHHG ALIQAGATPI 240
  241 YLETARNPFG FIGGIDAHCF KEAYLREQIR EVAPERADEK RPFRLAIIQL GTYDGTIYNA 300
  301 RQVVDRIGHL CDYILFDSAW VGYEQFIPMM NDCSPLLLEL TPEDPGIIVT QSVHKQQAGF 360
  361 SQTSQIHKKD KHIKGQARYC NHKRFNNAFM MHASTSHFYP LFAALDVNAK MHEGASGRYL 420
  421 WREAVKAGIE ARKLLLKKCK YIKPFIPSMI DGRQWQDYPT EQMADDLRFF EFEPGQKWHS 480
  481 FEGYEKGQYF VDPCKFLLTT PGIDAETGKY TEFGIPATIL ANFLRENNII PEKCDLNSIL 540
  541 FLMTPAEDMA KMQHLVSQIS RFEKLVDEDA PLSEVLPNVY NANKARYKDY TIRQLCQEMH 600
  601 NLYVSHDVKQ LQKEMFRHAH FPTKVMDPQE ANLEFIRGNV ELVPLSQIEG RIAAEGALPY 660
  661 PPGVLCMVPG EIWGGAVQRY FLALEEGINL LPGFSPELQG VYLESTPDGK IQALGYVLNK 720
  721

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..720] PSI-BLAST 156.0 Ornithine decarboxylase N-terminal "wing" domain; Ornithine decarboxylase major domain; Ornithine decarboxylase C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • signal transducer activity
    		•  3.45291511249928 bayes_pls_golite062009
  • molecular transducer activity
    		•  3.45291511249928 bayes_pls_golite062009
  • two-component response regulator activity
    		•  2.99674972321354 bayes_pls_golite062009
  • catalytic activity
    		•  2.66922865456094 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.85532625717753 bayes_pls_golite062009
  • transaminase activity
    		•  1.83482013760414 bayes_pls_golite062009
  • transferase activity
    		•  0.93810038069762 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.75522815127318 bayes_pls_golite062009
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  0.34204345956722 bayes_pls_golite062009
  • lyase activity
    		•  0.0414385380659299 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle