YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24371879, gi|...

General Information:
Name(s) found: gi|24371879 [NCBI NR]
gi|24345702 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|24371879|ref|NP_715921.1| type IV pilus biogenesis protein PilM [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345702|gb|AAN53366.1|AE015476_7 type IV pilus biogenesis protein PilM [Shewanella oneidensis MR-1] [NCBI NR]
  • type IV pilus biogenesis protein PilM [Shewanella oneidensis MR-1]gi|24345702|gb|AAN53366.1| type IV pilus biogenesis protein PilM [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • type IV pilus biogenesis protein PilM [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 359 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pilus assembly [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNLWKRQA PQMVGIDIGS HEVKAILLGK TADGYKILSH AAVPVKKGAI NDHDIRDADA  60
   61 VVECLRQIKR ILPKSVKYAA VAVSGSAVMT KVIYMDASLS EEEMEAQIEI EADNLIPYSL 120
  121 DEVSIDFETL NVNSTDPSKV DVLLSACRTD NIDTRVDALD EVELETKVVD VEGYALGRAV 180
  181 ELVLGQLPEG ARQKAVAMVD IGANMTTFCV VESGETTFIR EQAFGGELFT QSILSFYGMS 240
  241 YEQAEKAKIE GDLPRNYMFE VLSPFQTQLL QQIKRTLQIY CTSSGKDKVD YLVLCGGTSK 300
  301 LEGMANLLTN ELGVHTIIAD PFQGCLHADE SVKNILQPSI SKYMVACGLA LRSYGQWRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..359] PSI-BLAST 117.0 crystal structure of bovine hsc70(aa1-554)E213A/D214A mutant

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.631054730802339 bayes_pls_golite062009
  • protein binding
    		•  0.445575084737223 bayes_pls_golite062009
  • catalytic activity
    		•  0.124320622497806 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle