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Protein Overview: gi|24371706, gi|...

General Information:
Name(s) found: gi|24371706 [NCBI NR]
gi|24345482 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24371706|ref|NP_715748.1| selenocysteine-specific translation elongation factor [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345482|gb|AAN53193.1|AE015461_11 selenocysteine-specific translation elongation factor [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 673 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: selenocysteine incorporation [ISSLink to PubMed article]
    translational elongation [ISSLink to PubMed article]
    Molecular Function: translation elongation factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMVTAGHVD HGKSTLIRAL TGMNTDRLPE EKRRGMTIDL GYAFMPLRDG TRLAFIDVPG  60
   61 HEKFINNMLV GVSHVRHALL VLACDDGVMP QTREHLQILA LLPLNSLTLV LTKRDLVDDQ 120
  121 TAAKLASEGI TLLAEYGIEA SGVFEVCASD AGDAGVETLK QHILDIAEQQ STQAEDASSF 180
  181 RMTLDRAFSV KGVGCVVTGT VISGSVCVGD SLYSSGQKAK LRVRGIHCQG MEVHRALSGT 240
  241 RVALNLTGVD NHRAPARGDW LSSLPQADLC ARPVVHIRSF EPLTHWQNVH CHHGADHTLG 300
  301 RVSLLDEADG QGRYLAEIVL DKPLLLCQDD PIVLRHIGGK QTLGAGRVLA LKVSNRKKRT 360
  361 PERVSKLQQL AQLTNPVNVL ALLGQSEALS IDEIRWRWQL TDEGLAAMLA QAGLTRIGAY 420
  421 GLSTQLLEQE KQQFIDLLRE YHQEHPDQLG LGRNRLQRMS HSVLPSELAN KVLDSLCQEG 480
  481 QMALRGALLQ LADHRIVLDS EAQQCWQRLA PWLAQQTSPV WVTEMGEYLD LEPAKLRLLC 540
  541 FQLVQQGFIT AVVKDRYLLS EQLCHYANLV REHVDTHGKL ETAEFKDMIG LGRKVSIQLL 600
  601 EFFDRSGFTR RKFRSNSREI RDGELFYSHE NWRKNIGVEP TQDCWQPYPD LKSGRLTGDD 660
  661 VLPIEDNLIV ENV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..462] PSI-BLAST 77.522879 IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
    2 View Details [463..673] PSI-BLAST 47.0 C-terminal fragment of elongation factor SelB


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle