YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371706, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371706, gi|....

Description	E-value	Query Range	Subject Range
gi\|117918565, gi... - gi\|78685433\|ref\|ZP_00850211.1\| Translation elongation factor, selenocysteine-specific [Shewanella sp...	569.0	[0..1]	[672..1]
gi\|78511496, gi\|... - gi\|78689096\|ref\|ZP_00853761.1\| Translation elongation factor, selenocysteine-specific [Shewanella sp...	565.0	[0..1]	[672..1]
gi\|82495834, gi\|... - gi\|82495834\|ref\|ZP_00881407.1\| Translation elongation factor, selenocysteine-specific [Shewanella sp...	558.0	[0..1]	[672..1]
gi\|160858758, gi... - gi\|160873236\|ref\|YP_001552552.1\| selenocysteine-specific translation elongation factor [Shewanella b...	534.0	[0..1]	[672..1]
gi\|187732429, gi... - gi\|75179778\|ref\|ZP_00699765.1\| COG3276: Selenocysteine-specific translation elongation factor [Shige...	506.0	[0..1]	[629..1]
gi\|81247363, gi\|... - gi\|82545952\|ref\|YP_409899.1\| selenocysteinyl-tRNA-specific translation factor [Shigella boydii Sb227...	503.0	[0..1]	[629..1]
gi\|168766002, gi... - gi\|189364524\|gb\|EDU82943.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|168759680, gi... - gi\|189369533\|gb\|EDU87949.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|168779738, gi... - gi\|189002240\|gb\|EDU71226.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|187771494, gi... - gi\|187771494\|gb\|EDU35338.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|168753406, gi... - gi\|189359119\|gb\|EDU77538.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|188018389, gi... - gi\|188018389\|gb\|EDU56511.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|254594944, gi... - gi\|254795544\|ref\|YP_003080381.1\| selenocysteinyl-tRNA-specific translation factor [Escherichia coli ... gi\|208738383, gi... - gi\|208818260\|ref\|ZP_03258580.1\| selenocysteine-specific translation elongation factor [Escherichia c... gi\|208812226, gi... - gi\|208812226\|ref\|ZP_03253555.1\| selenocysteine-specific translation elongation factor [Escherichia c... gi\|209754996, gi... - pir\|\|B86034 hypothetical protein selB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217320647, gi... - gi\|217324426\|ref\|ZP_03440510.1\| selenocysteine-specific translation elongation factor [Escherichia c... gi\|209399470, gi... - gi\|209399470\|ref\|YP_002273070.1\| selenocysteine-specific translation elongation factor [Escherichia ... gi\|15804131, gi\|... - gi\|15804131\|ref\|NP_290170.1\| selenocysteinyl-tRNA-specific translation factor [Escherichia coli O157... gi\|13363942, gi\|... - gi\|15833721\|ref\|NP_312494.1\| selenocysteinyl-tRNA-specific translation factor [Escherichia coli O157... gi\|189379882, gi... - gi\|189379882\|gb\|EDU98298.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|13363942, gi\|... - gi\|15833721\|ref\|NP_312494.1\| selenocysteinyl-tRNA-specific translation factor [Escherichia coli O157... gi\|189374456, gi... - gi\|189374456\|gb\|EDU92872.1\| selenocysteine-specific translation elongation factor [Escherichia coli ... gi\|208726949, gi... - gi\|208807148\|ref\|ZP_03249485.1\| selenocysteine-specific translation elongation factor [Escherichia c... gi\|195935117 - gi\|195935117\|ref\|ZP_03080499.1\| selenocysteinyl-tRNA-specific translation factor [Escherichia coli O...	503.0	[0..1]	[629..1]
gi\|110643835, gi... - gi\|110643835\|ref\|YP_671565.1\| selenocysteinyl-tRNA-specific translation factor [Escherichia coli 536... gi\|191170353, gi... - gi\|75242623\|ref\|ZP_00726367.1\| COG3276: Selenocysteine-specific translation elongation factor [Esche... gi\|218429441, gi... - gi\|218691877\|ref\|YP_002400089.1\| selenocysteinyl-tRNA-specific translation factor [Escherichia coli ...	501.0	[0..1]	[629..1]
gi\|110617284, gi... - gi\|110807736\|ref\|YP_691256.1\| selenocysteinyl-tRNA-specific translation factor [Shigella flexneri 5 ... gi\|30065132, gi\|... - gi\|30065132\|ref\|NP_839303.1\| selenocysteinyl-tRNA-specific translation factor [Shigella flexneri 2a ...	500.0	[0..1]	[629..1]
gi\|192958123, gi... - gi\|75237532\|ref\|ZP_00721565.1\| COG3276: Selenocysteine-specific translation elongation factor [Esche...	500.0	[0..1]	[629..1]

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Predicted Domain #1

Region A:
Residues: [1-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMVTAGHVD HGKSTLIRAL TGMNTDRLPE EKRRGMTIDL GYAFMPLRDG TRLAFIDVPG  60
   61 HEKFINNMLV GVSHVRHALL VLACDDGVMP QTREHLQILA LLPLNSLTLV LTKRDLVDDQ 120
  121 TAAKLASEGI TLLAEYGIEA SGVFEVCASD AGDAGVETLK QHILDIAEQQ STQAEDASSF 180
  181 RMTLDRAFSV KGVGCVVTGT VISGSVCVGD SLYSSGQKAK LRVRGIHCQG MEVHRALSGT 240
  241 RVALNLTGVD NHRAPARGDW LSSLPQADLC ARPVVHIRSF EPLTHWQNVH CHHGADHTLG 300
  301 RVSLLDEADG QGRYLAEIVL DKPLLLCQDD PIVLRHIGGK QTLGAGRVLA LKVSNRKKRT 360
  361 PERVSKLQQL AQLTNPVNVL ALLGQSEALS IDEIRWRWQL TDEGLAAMLA QAGLTRIGAY 420
  421 GLSTQLLEQE KQQFIDLLRE YHQEHPDQLG LGRNRLQRMS HS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.522879
Match:	1zo1I
Description:	IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [463-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLPSELANKV LDSLCQEGQM ALRGALLQLA DHRIVLDSEA QQCWQRLAPW LAQQTSPVWV  60
   61 TEMGEYLDLE PAKLRLLCFQ LVQQGFITAV VKDRYLLSEQ LCHYANLVRE HVDTHGKLET 120
  121 AEFKDMIGLG RKVSIQLLEF FDRSGFTRRK FRSNSREIRD GELFYSHENW RKNIGVEPTQ 180
  181 DCWQPYPDLK SGRLTGDDVL PIEDNLIVEN V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1lvaA
Description:	C-terminal fragment of elongation factor SelB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits