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Protein Overview: gi|24371702, gi|...

General Information:
Name(s) found: gi|24371702 [NCBI NR]
gi|24345478 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24371702|ref|NP_715744.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345478|gb|AAN53189.1|AE015461_7 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 304 amino acids

    Gene Ontology:
    Cellular Component: formate dehydrogenase complex [ISSLink to PubMed article]
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    Molecular Function: electron carrier activity [ISSLink to PubMed article]
    formate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQDIIQRS GTSQATPPAQ ARVGGVKQIA KLFDATKCNG CKACQVACSE WNDLREEVGS  60
   61 FQGTYQNPAS LSPECWTLMK YNEIEDQGKL RWQFTHSACM HCADPACLKA CSTSGAIIQH 120
  121 ANGTVDFDSD KCIGCGYCAS ACPFDIPKIS AVDNKAYKCT MCSDRLAVGL EPSCVKSCTT 180
  181 GALRFGTRED MLFASEKRVN ELKERGFPKA GLYNPEGVGG TGMLMILHDV TQPETYEMPK 240
  241 DPQIPLSVTL WQDWVKPLGT VGLLATAAVA CLHKITVGRN IVEEDQPGYQ PPEEEVKQEE 300
  301 EAKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..304] PSI-BLAST 67.69897 Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  10.9674358961972 bayes_pls_golite062009
  • oxidoreductase activity
    		•  5.98361135786786 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  5.77927347135001 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  5.39747453448396 bayes_pls_golite062009
  • electron carrier activity
    		•  5.05393703018095 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  3.13953145151561 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  2.76338281383262 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  2.70037803782769 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  2.09041948600744 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  1.80621486978907 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  1.5619384041388 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  1.30496569995148 bayes_pls_golite062009
  • metal cluster binding
    		•  1.30496569995148 bayes_pls_golite062009
  • catalytic activity
    		•  0.488483980994331 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle