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Protein Overview: gi|24345477, gi|...

General Information:
Name(s) found: gi|24371701 [NCBI NR]
gi|24345477 [NCBI NR]
Description(s) found:
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  • gi|24371701|ref|NP_715743.1| selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345477|gb|AAN53188.1|AE015461_6 selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit [Shewanella oneidensis MR-1]gi|24345477|gb|AAN53188.1| selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 1004 amino acids

    Gene Ontology:
    Cellular Component: formate dehydrogenase complex [ISSLink to PubMed article]
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    Molecular Function: formate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRQFFKLC AAGAATSAIS ALGLMSEKAY AAVREFKLLG AKETRNNCPY CSVGCGLLMY  60
   61 SQGSGGKNSE HAIFHIEGDA DHPVNRGALC SKGAGLVDYV NSPHRLQYPE YRAPGSNKWE 120
  121 RISWQDAFKR IARLMKDDRD ANLIEKNADG VTVNRWLTTG MMTSSGMANE SGLATQKFAR 180
  181 ALGLVAIDTI ARNUHSPTVA SLAPTFGRGA MTNHWIDIKN SNVVIIMGGN AAEAHPVGFG 240
  241 WVTEAMQHNN AKLIVVDPRF NRSASLADHY APIRSGTDIA FLLGVIRYLI STNQVNFDYV 300
  301 KAYTNASYLV RDDFDFHDGL FSGFDEAKGE YNKESWFYQL DEDGYAIVDE TLEHPRCVWN 360
  361 LLKQHVERYD FATVSNITGT PTEDYQVVCD AIASTHTKDR VATFMYALGW THHSKGAQNI 420
  421 RSMAMIQLLL GNIGQLGGGV NALRGHANVQ GSTDMGLLAQ SLPGYLKLPN DKEPTLAAHL 480
  481 AANTPKPLRP GQTNYWQNYP KFYVSLLKAF WGENATPENE FGYQWLPKWD QMYDFGKHLD 540
  541 MMYRGKVNGC IVQGVNAINS MPNRNKNIKA LSNLKFLVVL DNLSSETATF WQNEPGFNEV 600
  601 DTASIQTEVF RLPATVFAEE EGSIVNSGRW MQWHYKWANP PGEAMSDSEI VSGLLLELRK 660
  661 LYREEGGKLP EPIQAINWNY TDPHNPSSIE LTKELNGYDV ATKRQISSFA ELKADGSTAS 720
  721 ACWVYAGSWT EAGNQMARRD NHDPSGKGIT PGWAFAWPLN RRVLYNRASC DVNGKPWDEH 780
  781 RKIVEWKDGK WEGIDVPDFN AKLNPQESAH PFIMQADGVG RFFALKLLKE GPFPEHYEPV 840
  841 ESPIGTNPLH PNVVHSPVLR WFEGVKDTIG TKEEYPYACT TYSLTEHFNF WTTHCRLAAI 900
  901 AMPETFVEMN EQLAAEKGIK NGDWVKVSSK RGHILTKALV TKRMRPLQVN GQTVHTLGIP 960
  961 RHGSHNALTR KSYSCNVLTT EMGDANTGVP EYKAFLVNVE KAEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1004] PSI-BLAST 1000.0 Formate dehydrogenase N, alpha subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  12.8557183783781 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  7.57161550681607 bayes_pls_golite062009
  • oxidoreductase activity
    		•  7.18948979839656 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  7.16311737169172 bayes_pls_golite062009
  • electron carrier activity
    		•  2.49660481239302 bayes_pls_golite062009
  • nitrate reductase activity
    		•  2.20600951698793 bayes_pls_golite062009
  • catalytic activity
    		•  1.93875927205186 bayes_pls_golite062009
  • trimethylamine-N-oxide reductase activity
    		•  1.53833487723248 bayes_pls_golite062009
  • oxidoreductase activity, acting on other nitrogenous compounds as donors
    		•  1.12492792673137 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  1.10002765979078 bayes_pls_golite062009
  • molybdenum ion binding
    		•  1.06869099200697 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  0.552726587326143 bayes_pls_golite062009
  • metal cluster binding
    		•  0.552726587326143 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.134493772161849 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle