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Protein Overview: gi|24371609, gi|...

General Information:
Name(s) found: gi|24371609 [NCBI NR]
gi|24345359 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24371609|ref|NP_715651.1| DNA polymerase III, beta subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345359|gb|AAN53096.1|AE015452_9 DNA polymerase III, beta subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 366 amino acids

    Gene Ontology:
    Cellular Component: DNA polymerase III complex [ISSLink to PubMed article]
    Biological Process: DNA replication [ISSLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSIDRDAL LKPLQLVCGA VERRHNLPIL ANLLVEVSGH SLKLTGTDLE VELVGQAVIH  60
   61 GDIEEGRTTV PAKKLLDIVK SLPEQSELKV EQQDNKWLLR SGRSRFSLAT LPAEEYPNVE 120
  121 AFQAEIEFTL KQGVLKSLID ATQFSMANQD VRYYLNGLLI ETEGNMLRAI ATDGHRLALS 180
  181 HRVIEAQLPE KQVIVPRKGV MEMARLLETD DLDIAISIGD NAIRATTSTT VFTSKLVDGR 240
  241 FPDYRRVLPK GGDKIVIASR NHFKQALTRA SILSNEKFRG VRIQLEAGLL KITANNPEQE 300
  301 EAEEIIDVDY NNLPLEIGFN VSYLLDVLNN LKSDDVRITL IDGNSSALLE NHLEEDSMYV 360
  361 VMPMRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..366] PSI-BLAST 132.0 E. COLI DNA POLYMERASE BETA SUBUNIT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  10.1355867012964 bayes_pls_golite062009
  • DNA polymerase activity
    		•  10.0862166288891 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.50006430161592 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.53479307306028 bayes_pls_golite062009
  • transferase activity
    		•  2.88122926655527 bayes_pls_golite062009
  • binding
    		•  0.65029295764999 bayes_pls_golite062009
  • DNA polymerase processivity factor activity
    		•  0.616404933041 bayes_pls_golite062009
  • catalytic activity
    		•  0.48077242755678 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.4343174930339 bayes_pls_golite062009
  • DNA binding
    		•  0.129085697705275 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle