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Protein Overview: SKN1_YEAST

General Information:
Name(s) found: SKN1_YEAST [Swiss-Prot]
Description(s) found:
  • Beta-glucan synthesis-associated protein SKN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKN1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 771 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRNLTNNR HSNSENSVSG SENSFYSSNE QSRQSSSLEP ADGQNVRVSG NPFLGSEEFD  60
   61 EDYNSPSGDD ERRGANEYSS SSSINYNNDP NSDTSLLANE KNSPERNGQR MSDYKGYYAK 120
  121 TNLTSANNLN NHNNNNYKNI ISSSNDNSFA SHLQPPDRNL PSHPSSNNMS SFSNNSLIKS 180
  181 PPPFDRYPLV GTRHISAAQS QSQNLINEKK RANMTGSSSS AHDSSLSSTN LYMGEQDFSP 240
  241 FGGYPASFFP LTLDEKEDDD YIHNPNVEEE AKLDRRRFVD DFKHMDRRSF LGLLGILFLF 300
  301 MAGIFIFIVL PAITFSGVVY HHEHVHAANS AGSSSSNTTS KSLTEYQYPQ LAAIRTTLVD 360
  361 PDTPDSAKTR VAKDGSKWQL VFSDEFNAEG RTFYDGDDQF WTAPDIHYDA TKDLEWYSPD 420
  421 AVTTTNGTLT LRMDAFRNHD LYYRSGMVQS WNKLCFTEGA LEVSANLPNY GRVTGLWPGM 480
  481 WTMGNLGRPG YLASTQGVWP YSYEACDAGI TPNQSSPDGI SYLPGQKLSV CTCDNEDHPN 540
  541 QGVGRGAPEI DILEGEADTI LGVGVASQSL QIAPFDIWYM PDYDFIEVYN FTTTTMNTYA 600
  601 GGPFQQAVSA ISTLNVTWYE FGEEAGYFQK YAIEYLNDDD NGYIRWFVGE NPTFTLYATS 660
  661 LHPSGNIDWR RISKEPMSAI LNLGISNNWA YIDWQYIFFP VTMSIDYVRL YQPKGSTSIT 720
  721 CDPEDYPTYD YIQSHLNAYY NANLTDWEQA GYTFPKNILT GGCSSSKFSL S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..63] ORFEUS 8.05 No description for 1l8mA was found.
    2 View Details [64..142] ORFEUS 8.05 No description for 1l8mA was found.
    3 View Details [143..214] ORFEUS 8.05 No description for 1l8mA was found.
    4 View Details [215..265] ORFEUS 8.05 No description for 1l8mA was found.
    5 View Details [266..474] deduced N/A No confident structure predictions are available.
    6 View Details [475..771] PSI-BLAST 46.30103 Bacillus 1-3,1-4-beta-glucanase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.82375683349763 bayes_pls_golite062009
  • protein binding
    		•  0.964880666937228 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.351620947205387 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.21069016920331 bayes_pls_golite062009
  • DNA binding
    		•  0.0547031308830381 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.0124152418993231 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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