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Protein Overview: RRP7_YEAST

General Information:
Name(s) found: RRP7_YEAST [Swiss-Prot]
Description(s) found:
  • Ribosomal RNA-processing protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP7 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIEDISAMK NGFIVVPFKL PDHKALPKSQ EASLHFMFAK RHQSSNSNES DCLFLVNLPL  60
   61 LSNIEHMKKF VGQLCGKYDT VSHVEELLYN DEFGLHEVDL SALTSDLMSS TDVNEKRYTP 120
  121 RNTALLKFVD AASINNCWNA LKKYSNLHAK HPNELFEWTY TTPSFTTFVN FYKPLDIDYL 180
  181 KEDIHTHMAI FEQREAQAQE DVQSSIVDED GFTLVVGKNT KSLNSIRKKI LNKNPLSKHE 240
  241 NKAKPISNID KKAKKDFYRF QVRERKKQEI NQLLSKFKED QERIKVMKAK RKFNPYT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] MSA 2.00994 View MSA. No confident structure predictions are available.
    2 View Details [153..297] MSA 2.009975 View MSA. Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  5.63242063989137 bayes_pls_golite062009
  • mRNA binding
    		•  3.87784929382714 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.55052626921306 bayes_pls_golite062009
  • binding
    		•  3.3324591601331 bayes_pls_golite062009
    		• 3.14079080441249 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.9439583927206 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.58538594745054 bayes_pls_golite062009
  • structural molecule activity
    		•  1.30816853575581 bayes_pls_golite062009
  • protein binding
    		•  1.26544376923141 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.10029555513317 bayes_pls_golite062009
  • DNA binding
    		•  0.984725930713243 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.762984801550668 bayes_pls_golite062009
  • snoRNA binding
    		•  0.749770142991192 bayes_pls_golite062009
  • transcription factor activity
    		•  0.255891228964936 bayes_pls_golite062009
  • ligase activity
    		•  0.189138561929496 bayes_pls_golite062009
  • snRNA binding
    		•  0.168885334268568 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle