YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: GDE1_YEAST

General Information:
Name(s) found: GDE1_YEAST [Swiss-Prot]
Description(s) found:
  • Glycerophosphodiester phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDE1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 1223 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGKTFANH RIPEWSSQYV GYKSLKKMIK EITRLQEDIY RAHNKNSYDE GRPPTKMRDS  60
   61 SNSAQNYLDS PKIQKLLASF FFAVDRDIEK VDTFYNSQYA EYKKRFERLL SSNQFNEIKS 120
  121 TLVVDANKED AVAQTLLTKD TREMNMLLKG TSQASRLSYH KDDLIEIQSI LAELRKQFRN 180
  181 LKWYAELNKR AFGKILKKLD KKVGTNQQMS TMKTRILPLQ FANDSLITKD LSLLKTIWEQ 240
  241 VTFRINSYER VMRSTSPNAN ANDNTEFFKI ICVFIEEDDS KGLIRELTNL YSELSLIPTR 300
  301 IMISVLNKAA LSKSLACIDA ILKVIPSLND SEDINRRNFF HHHIIAIGKL IRKQEILSRK 360
  361 KKSQPSKYTN SEGEIVTDLR TLHTTLSAPA ESDSITEEEK SSACTLSYIL EELPIHLRPC 420
  421 LFQHDNYKRT PLHYSCQYGL SEVTKLIIKL MKEWNIWNEI PIDDVSAFGD AESLTPLHLC 480
  481 VLGAHPKTTE VLLQSLDPNV KLKSSSLLHL ATEWNNYPLL HVLLSSKRFD INYQDNELHE 540
  541 TPLYLACRLN FFEAAVCLLY NGADLEIREK LFGWTAIFVA AAEGFTDIVK LLIANNANFD 600
  601 IEDEGGWTPM EHAVLRGHLH IADMVQIRDE LVTHPHSQLN SGSEEKEPLN EISAGELNER 660
  661 NENGNGGNKG SLGKLAGPIK SYGHRFLDNN ESLILITLGS NDTRNKSPSI SLSSEALAKV 720
  721 IGLETDCALS LVISCNDSID KSSVILDLPL DDNVDAVDFK VPFKVDYSHT LYFDIVPTYG 780
  781 TRSLETHNRI DCQKNNNNYV MARGVSMLNK SYSSVGVNRS ILNGSVTVPI IANHTLEILG 840
  841 TLKFEYIIIT PFEHPQLPLE RTETYWKSLV STRVIGHRGL GKNNPNKSLQ IGENTVESFI 900
  901 MAASLGASYV EFDVQLTKDN VPVVYHDFLV AETGVDIPMH ELTLEQFLDL NNADKEHIQR 960
  961 GAGHSPHHVN GADTALQKYR GRSVDDSDVS TLRRAWDLHD NDPNGKSNNA HWSDNRMRLT1020
 1021 KTFKKNNFKG NARGHSIASS FVTLKELFKK IPANVGFNIE CKFPMLDEAE EEELGQIMME1080
 1081 MNHWVDTVLK VVFDNANGRD IIFSSFHPDI CIMLSLKQPV IPILFLTEGG SEQMADLRAS1140
 1141 SLQNGIRFAK KWNLLGIVSA AAPILKAPRL VQVVKSNGLV CVTYGVDNND PENASIQIEA1200
 1201 GVDAVIVDSV LAIRRGLTKK NEK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] Pfam 50.102373 SPX domain No confident structure predictions are available.
    2 View Details [203..262] deduced N/A No confident structure predictions are available.
    3 View Details [263..366] PSI-BLAST 177.045757 Ankyrin-R
    4 View Details [367..499]
    [516..527]    		 PSI-BLAST 177.045757 Ankyrin-R
    5 View Details [500..515]
    [528..680]    		 PSI-BLAST 177.045757 Ankyrin-R
    6 View Details [681..748] PSI-BLAST 9.0 Swi6 ankyrin-repeat fragment
    7 View Details [749..857] deduced N/A No confident structure predictions are available.
    8 View Details [858..1039] PSI-BLAST 47.69897 Hypothetical protein TM1621
    9 View Details [1040..1223] Pfam 14.130768 Glycerophosphoryl diester phosphodiesterase family No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • structural molecule activity
    		•  2.22255916855045 bayes_pls_golite062009
  • binding
    		•  1.62593430784178 bayes_pls_golite062009
  • protein binding
    		•  1.39636607384619 bayes_pls_golite062009
  • calcium-independent phospholipase A2 activity
    		•  0.621306773219824 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • glycerophosphodiester phosphodiesterase activity
    		•  4.27697417361287 bayes_pls_golite062009
  • phosphoric diester hydrolase activity
    		•  3.6633363681844 bayes_pls_golite062009
  • phospholipase activity
    		•  3.3535603060637 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  2.89024275707278 bayes_pls_golite062009
  • phospholipase C activity
    		•  2.81479108775786 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphodiesterase activity
    		•  2.13368269358874 bayes_pls_golite062009
  • phosphoinositide phospholipase C activity
    		•  2.13368269358874 bayes_pls_golite062009
  • hydrolase activity
    		•  1.64631444998344 bayes_pls_golite062009
  • lipase activity
    		•  1.30779031242608 bayes_pls_golite062009
  • phosphatidylglycerol phospholipase C activity
    		•  1.28645679518658 bayes_pls_golite062009
  • catalytic activity
    		•  1.22328099675039 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.21202479488854 bayes_pls_golite062009
  • binding
    		•  0.701659508863933 bayes_pls_golite062009
  • protein binding
    		•  0.137516733383577 bayes_pls_golite062009
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle