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Protein Overview: DDC1_YEAST

General Information:
Name(s) found: DDC1_YEAST [Swiss-Prot]
Description(s) found:
  • DNA damage checkpoint protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DDC1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 612 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKATITES GKQNIWFRAI YVLSTIQDDI KITVTTNELI AWSMNETDTT LCQVRFQKSF  60
   61 FEEYEFKPHE IVFGENGVQV IEDTYGNSHK LYSFRVNGRH LTTISRKPDG DGIKSFTIAV 120
  121 NNTSTCPESL ANRLIVVIEM DSLIVKEYCP QFQPIKYDPI IINLKYKRRF LDVFGTAASD 180
  181 RNPQEPLDPK LLDVFTNTER ELTSALFNEE VESDIRKRNQ LTAADEINYI CCNSTLLKNF 240
  241 LDNCNVNVTD EVKLEINVHR LSITAFTKAV YGKNNDLLRN ALSMSNTIST LDLEHYCLFT 300
  301 TIEDEKQDKR SHSKRREHMK SIIFKLKDFK NFITIGPSWK TTQDGNDNIS LWFCHPGDPI 360
  361 LMQMQKPGVK LELVEVTDSN INDDILEGKF IKTAISGSKE EAGLKDNKES CESPLKSKTA 420
  421 LKRENLPHSV AGTRNSPLKV SYLTPDNGST VAKTYRNNTA RKLFVEEQSQ STNYEQDKRF 480
  481 RQASSVHMNM NREQSFDIGT THEVACPRNE SNSLKRSIAD ICNETEDPTQ QSTFAKRADT 540
  541 TVTWGKALPA ADDEVSCSNI DRKGMLKKEK LKHMQGLLNS QNDTSNHKKQ DNKEMEDGLG 600
  601 LTQVEKPRGI FD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..612] deduced N/A No confident structure predictions are available.
    2 View Details [380..612] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  3.42445034513733 bayes_pls_golite062009
  • DNA polymerase activity
    		•  3.38846098516892 bayes_pls_golite062009
  • DNA binding
    		•  2.04318251261279 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.01144876655621 bayes_pls_golite062009
  • binding
    		•  1.89545142352738 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.06294354174876 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.747485459405256 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.650750512308684 bayes_pls_golite062009
  • DNA polymerase processivity factor activity
    		•  0.614549267405772 bayes_pls_golite062009
  • catalytic activity
    		•  0.474398499157949 bayes_pls_golite062009
  • protein binding
    		•  0.455721709236539 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.397447452409526 bayes_pls_golite062009
  • mismatched DNA binding
    		•  0.360278840045828 bayes_pls_golite062009
  • DNA insertion or deletion binding
    		•  0.130265364927567 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle