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Protein Overview: gi|30698221, gi|...

General Information:
Name(s) found: gi|31711838 [NCBI NR]
gi|30698221 [NCBI NR]
gi|21539437 [NCBI NR]
Description(s) found:
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  • gi|31711838|gb|AAP68275.1| At5g66360 [Arabidopsis thaliana] [NCBI NR]
  • gi|30698221|ref|NP_201437.2| ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21539437|gb|AAM53271.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana] [NCBI NR]
  • At5g66360 [Arabidopsis thaliana]gi|21539437|gb|AAM53271.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]gi|30698221|ref|NP_201437.2| ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosomal RNA adenine dimethylase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribosomal RNA adenine dimethylase family protein | chr5:26527555-26528937 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • dimethyladenosine transferase-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g66360 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • S-adenosylmethionine-dependent methyltransferase/ rRNA (adenine-N6,N6-)-dimethyltransferase/ rRNA methyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal RNA adenine dimethylase family protein | chr5:26510329-26511711 FORWARD LENGTH=352 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g66360 OS=Arabidopsis thaliana GN=At5g66360 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9FK02, Isoform 2 of Ribosomal RNA small subunit methyltransferase, mitochondrial OS=Arabidopsis thaliana GN=DIM1B [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 352 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: rRNA modification [IEA]
    Molecular Function: rRNA methyltransferase activity [IEA]
    rRNA (adenine-N6,N6-)-dimethyltransferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRLKDQTL IKINSTRSYL SSLVFRRDSH SQARTKPDHD RRRRGYERDV RIEEKKEHDG  60
   61 LFLCKSKGQH LLTNTRILDS IVRSSDIRPT DTVLEIGPGT GNLTMKLLEA AQNVVAVELD 120
  121 KRMVEILRKR VSDHGFADKL TIIQKDVLKT DFPHFDLVVA NIPYNISSPL VAKLVYGSNT 180
  181 FRSATLLLQK EFSRRLLANP GDSDFNRLAV NVKITPKEII PDVNVQEWLA FTRTCFGKKN 240
  241 KTLGSMFRQK KKVMELQSLS AGRHGSNVEV MNQTGGDSDS DVEEDGKDDL LCLDTDASMF 300
  301 KERVIEILRT NGFEEKRPSK LSHRELLHLL SLFNQAGIFF HDITSLQMDL HE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] PSI-BLAST 16.522879 Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase
    2 View Details [73..352] PSI-BLAST 49.154902 Crystal structure of human Dimethyladenosine transferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • rRNA methyltransferase activity
    		•  4.09362182773099 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  4.00768472859991 bayes_pls_golite062009
  • methyltransferase activity
    		•  3.57681394097837 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  3.49392219433935 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.39429041855776 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  3.07428840534971 bayes_pls_golite062009
  • transferase activity
    		•  2.22303238506686 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  2.00108769169811 bayes_pls_golite062009
  • RNA binding
    		•  1.99752836873461 bayes_pls_golite062009
  • rRNA (adenine) methyltransferase activity
    		•  1.83964463328968 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  1.76571145896453 bayes_pls_golite062009
  • rRNA (adenine-N6,N6-)-dimethyltransferase activity
    		•  1.75675289134467 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.94499223839747 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.914549843668268 bayes_pls_golite062009
  • rRNA (uridine-2'-O-)-methyltransferase activity
    		•  0.90544396691236 bayes_pls_golite062009
  • DNA binding
    		•  0.86027591375666 bayes_pls_golite062009
  • rRNA (uridine) methyltransferase activity
    		•  0.742142092552002 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.616949327277483 bayes_pls_golite062009
  • binding
    		•  0.383237930789959 bayes_pls_golite062009
  • O-methyltransferase activity
    		•  0.250946859465502 bayes_pls_golite062009
  • mRNA binding
    		•  0.0540207721800283 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  0.0408000230099101 bayes_pls_golite062009
  • snoRNA binding
    		•  0.00848192089639488 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle