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Protein Overview: AML1_ARATH

General Information:
Name(s) found: AML1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79331867|ref|NP_001032122.1| AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|31711778|gb|AAP68245.1| At5g61960 [Arabidopsis thaliana] [NCBI NR]
  • gi|222422847|dbj|BAH19410.1| AT5G61960 [Arabidopsis thaliana] [NCBI NR]
  • gi|18424532|ref|NP_568946.1| AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|17064920|gb|AAL32614.1| Mei2-like protein [Arabidopsis thaliana] [NCBI NR]
  • Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1 [Swiss-Prot]
  • At5g61960 [Arabidopsis thaliana]gi|17064920|gb|AAL32614.1| Mei2-like protein [Arabidopsis thaliana]gi|18424532|ref|NP_568946.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA recognition motif (RRM)-containing protein, Mei2-like protein, Arabidopsis thaliana, EMBL:D86122 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AML1 | AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding | chr5:24896227-24900709 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Mei2-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g61960 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AML1; RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AML1, ML1 | MEI2-like protein 1 | chr5:24879001-24883483 REVERSE LENGTH=915 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 915 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: positive regulation of meiosis [IGI]
    meristem development [IGI]
    Molecular Function: RNA binding [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY  60
   61 QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL FSRKLRLQGS DMLSTMSANT 120
  121 VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV 180
  181 GGMELDGDIF SSVSHRNGER GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF 240
  241 GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS 300
  301 KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG 360
  361 LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN TSSGHIGRHF PGMISSTSSD 420
  421 GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI 480
  481 QSMPNLHPHS FSEYVDNFAN GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG 540
  541 SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM 600
  601 ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH 660
  661 KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG SFDSPNERYR NLSHRRSESS 720
  721 SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID 780
  781 FKNKCNVGYA FINLIEPEKI VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN 840
  841 SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN 900
  901 REETPNGTDP FLKEN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 36.69897 Poly(A)-binding protein
    2 View Details [211..385] PSI-BLAST 45.0 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    3 View Details [386..727] PSI-BLAST 4.0 No description for 1y0fB was found.
    4 View Details [728..767] PSI-BLAST 5.69897 poly(A) binding protein
    5 View Details [768..840] FFAS03 0.955 No description for 2dnoA was found.
    6 View Details [841..915] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle