| Protein: | AML1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 915 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AML1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
642.0 | [0..32] | [915..1] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY 60
61 QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL FSRKLRLQGS DMLSTMSANT 120
121 VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV 180
181 GGMELDGDIF SSVSHRNGER GGNNSVGELN
|
| Detection Method: |  |
| Confidence: | 36.69897 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [211-385] |
1 11 21 31 41 51
| | | | | |
1 RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA 60
61 RALQNKLLRG TKLDIRYSIS KENPSQKDTS KGALLVNNLD SSISNQELNR LVKSYGEVKE 120
121 IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCA
|
| Detection Method: | |
| Confidence: | 45.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [386-727] |
1 11 21 31 41 51
| | | | | |
1 ANDTEGCLPK TSYSNTSSGH IGRHFPGMIS STSSDGGSMR VIHNSIGSPV NSFIERHRSL 60
61 SIPIGFPPSA NGISASKPVG LQEHGHHFDN SNMGIQSMPN LHPHSFSEYV DNFANGSPYT 120
121 SSAFSEMVSD GSKANEGFMI HNVRGVEGFS GGGIGSPMHQ SSRRPINLWS NSNTQQQNPS 180
181 SGMMWPNSPS HINSIPTQRP PVTVFSRAPP IMVNMASSPV HHHIGSAPVL NSPFWDRRQA 240
241 YVAESLESSG FHIGSHGSMG IPGSSPSHPM DIGSHKTFSV GGNRMDVNSQ NAVLRSPQQL 300
301 SHLFPGRSPM GSMPGSFDSP NERYRNLSHR RSESSSSNAD KK
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [728-767] |
1 11 21 31 41 51
| | | | | |
1 LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [768-840] |
1 11 21 31 41 51
| | | | | |
1 CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF NGKKWEKFNS EKVATLTYAR 60
61 IQGKTALIAH FQN
|
| Detection Method: | |
| Confidence: | 0.955 |
| Match: | 2dnoA |
| Description: | No description for 2dnoA was found. |
|
Region A: Residues: [841-915] |
1 11 21 31 41 51
| | | | | |
1 SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN 60
61 REETPNGTDP FLKEN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
