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Protein Overview: gi|42519806, gi|...

General Information:
Name(s) found: gi|42519806 [NCBI NR]
gi|41584096 [NCBI NR]
Description(s) found:
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  • gi|42519806|ref|NP_965736.1| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific [Lactobacillus johnsonii NCC 533] [NCBI NR]
  • gi|41584096|gb|AAS09702.1| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific [Lactobacillus johnsonii NCC 533] [NCBI NR]
  • phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific [Lactobacillus johnsonii NCC 533]gi|41584096|gb|AAS09702.1| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific [Lactobacillus johns [nrdb_11152004_Chlamydomonas]
  • phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, sucrose specific [Lactobacillus johnsonii NCC 533] [nr-271106-contam.fasta]
    • Organism: Lactobacillus johnsonii NCC 533
    Length: 647 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHKKVAEAV IEAVGRDNLV AAAHCATRLR LVLKDDSKVN MKMLDSDPDI KGTFKTNGQF  60
   61 QIIIGPGDVN NVYDELIKMT GLSELSTDDL KKVAQKDQKF NPVMAFIKLL SDIFVPIIPA 120
  121 LVAGGLLMAL NNFLTSPGLF GAKSVVQMAP NVKGLSEIIQ VMSAAPFIFM PILVGMSAAK 180
  181 RFGANQFLGA TIGMIMTTPA LGGAGKYWDI FGLHVSQTNY QYQVIPVLVA VWLLAFLEKR 240
  241 FHKWLPSAVD FTFTPLLSIM ITGFLTFTII GPVFKGVSDA ITAAIVWLYN TTGAFGMGIF 300
  301 GLSYSAIVTT GLHQSFPAVE TQLLAEYARG RGSGDFIFVT ACMANVAQGA ATFAIYFLTK 360
  361 NEKVKGLASS SGVSALLGIT EPALFGVNLK YKFPFFCALI GAGVGAAFAG LMHVTAAALG 420
  421 SAGFLGFLSM VPKSIPMWAL SVVISFIVAF GLTFVYGKRH FKEDVVEESG TVESAGDQVA 480
  481 QQEKAEQIIK EDKELHDEVI AAPVSGKAES LKDVNDPVFS TEAMGKGAAM VPSEGTIYSP 540
  541 VTGEITVAYE TKHAYGIKSD EGAEVLIHIG IDTVNMKGEG FTTDVKQGQH VEKGEKLGTV 600
  601 DLDAVKKAGY DTTVMTVITN TTSYANVQRI DGVEKKHGDD LIAVTKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] PSI-BLAST 10.69897 No description for 2r4qA was found.
    2 View Details [83..270] MSA 2.652989 View MSA. No confident structure predictions are available.
    3 View Details [271..478] MSA 3.656991 View MSA. No confident structure predictions are available.
    4 View Details [479..647] PSI-BLAST 42.0 Glucose-specific factor III (glsIII)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
    		•  3.63095060058431 bayes_pls_golite062009
  • carbohydrate transmembrane transporter activity
    		•  2.68179471492286 bayes_pls_golite062009
  • binding
    		•  0.587569240975485 bayes_pls_golite062009
  • transporter activity
    		•  0.416424316903358 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.245554686788991 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.00716122418063003 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle