YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42519806, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.99
Transmembrane Helix	109	130	0.88
Non-Cytoplasmic	131	157	0.85
Transmembrane Helix	158	176	0.95
Cytoplasmic	177	186	0.69
Transmembrane Helix	187	205	0.93
Non-Cytoplasmic	206	219	0.83
Transmembrane Helix	220	237	0.90
Cytoplasmic	238	250	0.78
Transmembrane Helix	251	271	0.92
Non-Cytoplasmic	272	290	0.70
Transmembrane Helix	291	313	0.81
Cytoplasmic	314	335	0.86
Transmembrane Helix	336	358	0.90
Non-Cytoplasmic	359	365	0.83
Transmembrane Helix	366	387	0.86
Cytoplasmic	388	394	0.80
Transmembrane Helix	395	417	0.91
Non-Cytoplasmic	418	434	0.79
Transmembrane Helix	435	456	0.93
Cytoplasmic	457	647	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHKKVAEAV IEAVGRDNLV AAAHCATRLR LVLKDDSKVN MKMLDSDPDI KGTFKTNGQF  60
   61 QIIIGPGDVN NVYDELIKMT GLSELSTDDL KKVAQKDQKF NPVMAFIKLL SDIFVPIIPA 120
  121 LVAGGLLMAL NNFLTSPGLF GAKSVVQMAP NVKGLSEIIQ VMSAAPFIFM PILVGMSAAK 180
  181 RFGANQFLGA TIGMIMTTPA LGGAGKYWDI FGLHVSQTNY QYQVIPVLVA VWLLAFLEKR 240
  241 FHKWLPSAVD FTFTPLLSIM ITGFLTFTII GPVFKGVSDA ITAAIVWLYN TTGAFGMGIF 300
  301 GLSYSAIVTT GLHQSFPAVE TQLLAEYARG RGSGDFIFVT ACMANVAQGA ATFAIYFLTK 360
  361 NEKVKGLASS SGVSALLGIT EPALFGVNLK YKFPFFCALI GAGVGAAFAG LMHVTAAALG 420
  421 SAGFLGFLSM VPKSIPMWAL SVVISFIVAF GLTFVYGKRH FKEDVVEESG TVESAGDQVA 480
  481 QQEKAEQIIK EDKELHDEVI AAPVSGKAES LKDVNDPVFS TEAMGKGAAM VPSEGTIYSP 540
  541 VTGEITVAYE TKHAYGIKSD EGAEVLIHIG IDTVNMKGEG FTTDVKQGQH VEKGEKLGTV 600
  601 DLDAVKKAGY DTTVMTVITN TTSYANVQRI DGVEKKHGDD LIAVTKR