YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|41583295, gi|...

General Information:
Name(s) found: gi|42519008 [NCBI NR]
gi|41583295 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] [NCBI NR]
  • gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] [NCBI NR]
    • Organism: Lactobacillus johnsonii NCC 533
    Length: 296 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNLEDYLR FSQVERGLSP NTIVSYRTDL EEYLSYLEDQ NETSWEVDYL VVDAFLATQK  60
   61 DKGKATTSIS RMISSLRKFY QWLLRQDIIE RDPLVKIDSP KSERRLPTAL SEEEVTKLLD 120
  121 APDTNTRLGI RDRAMLEVLY ATGMRVSELI NLRTGDIHSE LKIIRVLGKG SKERLVPITE 180
  181 VALSWLEKYQ KDVRENQVLK SGQFTDVIFL NNHGHQLTRQ AVWQKIKKYC QLIGITKNVT 240
  241 PHTLRHTFAT HLLENGADLR VVQEILGHSD ITTTQIYTNL TQKHILEVYN QAHPRA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..296] PSI-BLAST 54.221849 SITE-SPECIFIC RECOMBINASE, XERD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • site-specific recombinase activity
    		•  4.99325011803106 bayes_pls_golite062009
  • integrase activity
    		•  3.60695091575172 bayes_pls_golite062009
  • catalytic activity
    		•  2.22520758916604 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.11292854906722 bayes_pls_golite062009
  • DNA binding
    		•  0.10970863758177 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.06580979261817 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle