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Protein Overview: ROS1_ARATH

General Information:
Name(s) found: ROS1_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1393 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: DNA repair [IMP]
    DNA methylation [IDA]
    negative regulation of chromatin silencing [IMP]
    DNA demethylation [IMP]
    chromatin silencing [IMP]
    Molecular Function: protein binding [IPI]
    DNA-(apurinic or apyrimidinic site) lyase activity [IDA][ISS]
    DNA N-glycosylase activity [IDA][ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQRREESS FQQPPWIPQT PMKPFSPICP YTVEDQYHSS QLEERRFVGN KDMSGLDHLS  60
   61 FGDLLALANT ASLIFSGQTP IPTRNTEVMQ KGTEEVESLS SVSNNVAEQI LKTPEKPKRK 120
  121 KHRPKVRREA KPKREPKPRA PRKSVVTDGQ ESKTPKRKYV RKKVEVSKDQ DATPVESSAA 180
  181 VETSTRPKRL CRRVLDFEAE NGENQTNGDI REAGEMESAL QEKQLDSGNQ ELKDCLLSAP 240
  241 STPKRKRSQG KRKGVQPKKN GSNLEEVDIS MAQAAKRRQG PTCCDMNLSG IQYDEQCDYQ 300
  301 KMHWLYSPNL QQGGMRYDAI CSKVFSGQQH NYVSAFHATC YSSTSQLSAN RVLTVEERRE 360
  361 GIFQGRQESE LNVLSDKIDT PIKKKTTGHA RFRNLSSMNK LVEVPEHLTS GYCSKPQQNN 420
  421 KILVDTRVTV SKKKPTKSEK SQTKQKNLLP NLCRFPPSFT GLSPDELWKR RNSIETISEL 480
  481 LRLLDINREH SETALVPYTM NSQIVLFGGG AGAIVPVTPV KKPRPRPKVD LDDETDRVWK 540
  541 LLLENINSEG VDGSDEQKAK WWEEERNVFR GRADSFIARM HLVQGDRRFT PWKGSVVDSV 600
  601 VGVFLTQNVS DHLSSSAFMS LASQFPVPFV PSSNFDAGTS SMPSIQITYL DSEETMSSPP 660
  661 DHNHSSVTLK NTQPDEEKDY VPSNETSRSS SEIAISAHES VDKTTDSKEY VDSDRKGSSV 720
  721 EVDKTDEKCR VLNLFPSEDS ALTCQHSMVS DAPQNTERAG SSSEIDLEGE YRTSFMKLLQ 780
  781 GVQVSLEDSN QVSPNMSPGD CSSEIKGFQS MKEPTKSSVD SSEPGCCSQQ DGDVLSCQKP 840
  841 TLKEKGKKVL KEEKKAFDWD CLRREAQARA GIREKTRSTM DTVDWKAIRA ADVKEVAETI 900
  901 KSRGMNHKLA ERIQGFLDRL VNDHGSIDLE WLRDVPPDKA KEYLLSFNGL GLKSVECVRL 960
  961 LTLHHLAFPV DTNVGRIAVR LGWVPLQPLP ESLQLHLLEM YPMLESIQKY LWPRLCKLDQ1020
 1021 KTLYELHYQM ITFGKVFCTK SKPNCNACPM KGECRHFASA FASARLALPS TEKGMGTPDK1080
 1081 NPLPLHLPEP FQREQGSEVV QHSEPAKKVT CCEPIIEEPA SPEPETAEVS IADIEEAFFE1140
 1141 DPEEIPTIRL NMDAFTSNLK KIMEHNKELQ DGNMSSALVA LTAETASLPM PKLKNISQLR1200
 1201 TEHRVYELPD EHPLLAQLEK REPDDPCSYL LAIWTPGETA DSIQPSVSTC IFQANGMLCD1260
 1261 EETCFSCNSI KETRSQIVRG TILIPCRTAM RGSFPLNGTY FQVNEVFADH ASSLNPINVP1320
 1321 RELIWELPRR TVYFGTSVPT IFKGLSTEKI QACFWKGYVC VRGFDRKTRG PKPLIARLHF1380
 1381 PASKLKGQQA NLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..169] MSA 3.373996 View MSA. No confident structure predictions are available.
    2 View Details [170..322] deduced N/A No confident structure predictions are available.
    3 View Details [323..466] deduced N/A No confident structure predictions are available.
    4 View Details [467..748] deduced N/A No confident structure predictions are available.
    5 View Details [749..820] PSI-BLAST 17.30103 8-oxoguanine glycosylase
    6 View Details [821..1208] PSI-BLAST 79.30103 MutY adenine glycosylase in complex with DNA containing an A:oxoG pair
    7 View Details [1209..1393] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle