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Protein Overview: HDT4_ARATH

General Information:
Name(s) found: HDT4_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 203 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: production of siRNA involved in RNA interference [IGI]
    Molecular Function: histone deacetylase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFWGIEIKP GKPFKVIQKD GFMVHASQVT LGDVEKVKKD ETFAVYVKIG DDENGFMIGN  60
   61 LSQKFPQFSI DLYLGHEFEI SHNSTSSVYL IGYRTFDAFD ELDEEIDSDS ELDEYMEQQI 120
  121 AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG 180
  181 GKKNKSSGGK KRCPFPCGPS CKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] FFAS03 1.63 Chromatin decondensation protein 1 (Crp1, Nlp)
    2 View Details [98..203] MSA 1.034976 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle