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Protein Overview: gi|30682281, gi|...

General Information:
Name(s) found: gi|30725692 [NCBI NR]
gi|30682281 [NCBI NR]
gi|22655172 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|30725692|gb|AAP37868.1| At5g08200 [Arabidopsis thaliana] [NCBI NR]
  • gi|30682281|ref|NP_196437.2| peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22655172|gb|AAM98176.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 409 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cell wall macromolecule catabolic process [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP  60
   61 SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA DVKKMNNLVT DLQMFALKSL 120
  121 QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM 180
  181 YSLQGYYGLK PADRTVSDGG CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS 240
  241 RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS 300
  301 IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG 360
  361 NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT GRRNKTALD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] PSI-BLAST 5.0 Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
    2 View Details [219..409] MSA 1.306996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle