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Protein Overview: gi|22328777, gi|...

General Information:
Name(s) found: gi|30725402 [NCBI NR]
gi|22328777 [NCBI NR]
gi|18252187 [NCBI NR]
Description(s) found:
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  • gi|30725402|gb|AAP37723.1| At4g18810 [Arabidopsis thaliana] [NCBI NR]
  • gi|22328777|ref|NP_193616.2| binding / catalytic/ transcription repressor [Arabidopsis thaliana] [NCBI NR]
  • gi|18252187|gb|AAL61926.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • At4g18810 [Arabidopsis thaliana]gi|18252187|gb|AAL61926.1| putative protein [Arabidopsis thaliana]gi|22328777|ref|NP_193616.2| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | binding / catalytic/ transcription repressor | chr4:10322633-10325746 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At4g18810 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:10322622-10325735 REVERSE LENGTH=596 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At4g18810 OS=Arabidopsis thaliana GN=F28A21.220 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4JRN8, At4g18810 OS=Arabidopsis thaliana GN=F28A21.220 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 596 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    vacuole [IDA]
    Biological Process: metabolic process [IEA]
    regulation of nitrogen utilization [IEA]
    Molecular Function: catalytic activity [IEA]
    binding [IEA]
    transcription repressor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVSSSLKLS SSLSPSIIKL QGSSSSIDIK FSKYTSLPKP FLQLDDKSRR LRDQQVSHSL  60
   61 ELRSYRKRVT AKSGSQGWDF GRFVKTLYFF NGPPSPLKFV SSVFEKLTNG ATEEPVAEMG 120
  121 TSGIILVAGA TGGVGRRIVD ILRKRGLPVK ALVRNEEKAR KMLGPEIDLI VADITKENTL 180
  181 VPEKFKGVRK VINAVSVIVG PKEGDTPERQ KYNQGVRFFE PEIKGDSPEL VEYIGMKNLI 240
  241 NAVRDGVGLE NGKLIFGVGD NTFKDLPWGA LDDVVMGGVS ESNFIVDLTA GENGGPTGIF 300
  301 KGIVSTTNNG GFTSVRTKNF PEAENVSAYD GLELRLKGDG LRYKLIVRTS QDWDTVGYTA 360
  361 SFDTSPGQWQ SVRLPFSSLR PVFRARTVTD APPFNASSII SLQLMFSKFE YDGKLNPTFK 420
  421 EGPFELPLSS IRAYIQDPVT PRFVHVGSAG VTRPERPGLD LSKQPPAVRL NKELDFILTY 480
  481 KLKGEDLIRD SGIPFAIVRP CALTEEPAGA DLIFEQGDNI TGKVSRDEVA RICIAALESP 540
  541 YALNKTFEVK STVPFSEPFT VDPENPPPEK DYNEYFKTLK DGITGKEALE QSTVAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] PSI-BLAST 13.69897 No description for 2z5lA was found.
    2 View Details [122..459] PSI-BLAST 39.69897 dTDP-glucose 4,6-dehydratase (RmlB)
    3 View Details [460..596] PSI-BLAST 16.0 X-ray Structure of Gene Product from Arabidopsis Thaliana At5g02240

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.26736023026862 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.68812524232244 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle