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Protein Overview: gi|30725328, gi|...

General Information:
Name(s) found: gi|42565972 [NCBI NR]
gi|30725328 [NCBI NR]
gi|110736147 [NCBI NR]
Description(s) found:
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  • gi|42565972|ref|NP_191191.2| nucleotidyltransferase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30725328|gb|AAP37686.1| At3g56320 [Arabidopsis thaliana] [NCBI NR]
  • gi|110736147|dbj|BAF00045.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • At3g56320 [Arabidopsis thaliana]gi|42565972|ref|NP_191191.2| nucleotidyltransferase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | nucleotidyltransferase family protein | chr3:20897172-20899603 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding / nucleotidyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g56320 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:20886193-20888624 REVERSE LENGTH=603 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g56320 OS=Arabidopsis thaliana GN=At3g56320 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 603 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotidyltransferase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEIQERLSV SSSSSSSSSS LSLSTALPKG DSLPIDADSW MIAEERAHEI LCTIQPALVS  60
   61 DRSRNEIIDY VRTLIMSHEG IEVFSFGSVP LKTYLPDGDI DLTVLTKQNM DDDFYGQLCS 120
  121 RLQNEERESE FHATDVQFIP AQVKVIKCNI RNIAVDISFN QTAGLCALCF LEQVDQLFGR 180
  181 DHLFKRSIIL VKAWCYYESR ILGANTGLIS TYALAVLVLY IINLFHSSLS GPLAVLYKFL 240
  241 DYYGSFDWNN YCISVNGPVP ISSLPELTAA SPENGHELLL DEKFLRNCVE LYSAPTKAVD 300
  301 SNGLEFPIKH LNIVDPLKYS NNLGKSVTQG NVQRIRHAFT LGARKLRDVL SLPGDTMGWR 360
  361 LEKFFRNSLE RNGKGQRQDV NDPVTAFGTG RSELSELSGD FDSSFGRLVY GQMYHGHSLP 420
  421 GTFQHGYIPV SSHLSGWDIV RHLVTYRKNE FHLRSLNVST SMQPFPLHSL PNGCQNMRKT 480
  481 RGTGTYIPDM SQQVYSDRFR ESGTGTSSTN HLEASSEAID NDGASSCCNL SGEVSTSCTS 540
  541 NKGEECVRPE SVLKSQRSAN LELDDNCQFP PPENLVEPRT SSTLVLENGK EESIRSSQTM 600
  601 NGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..526] PSI-BLAST 72.69897 Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
    2 View Details [527..603] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.222270543382941 bayes_pls_golite062009
  • transferase activity
    		•  0.00393984128503999 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle