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Protein Overview: gi|186488278, gi...

General Information:
Name(s) found: gi|52421279 [NCBI NR]
gi|51536440 [NCBI NR]
gi|186488278 [NCBI NR]
Description(s) found:
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  • gi|52421279|gb|AAU45209.1| At1g34380 [Arabidopsis thaliana] [NCBI NR]
  • gi|51536440|gb|AAU05458.1| At1g34380 [Arabidopsis thaliana] [NCBI NR]
  • gi|186488278|ref|NP_001117409.1| 5'-3' exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • At1g34380 [Arabidopsis thaliana]gi|51536440|gb|AAU05458.1| At1g34380 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | 5'-3' exonuclease family protein | chr1:12552817-12554277 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g34380 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | 5'-3' exonuclease family protein | chr1:12552839-12554299 REVERSE LENGTH=347 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 5'-3' exonuclease-like protein OS=Arabidopsis thaliana GN=At1g34380 PE=2 SV=1 [ARATH-contam.fasta]
  • 5'-3' exonuclease family protein OS=Arabidopsis thaliana GN=At1g34380 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 347 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biological_process [ND]
    Molecular Function: 5'-3' exonuclease activity [IEA]
    DNA binding [IEA]
    catalytic activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVGFIQPN SLFSFSTKSI DKTQPSRTKW VSSSSSSFSS HSSVETFHRT GNVQVLQKDV  60
   61 LCGNNEEIRK KNKRVFFLDV SPLCYEGNKP SSQAFGHWIS LFFSQVSLTD PVIAVIDGEE 120
  121 GNQRRRELLP SYKAHRKSPN HGRYSKRPHQ FVDEVLRKCN VPVVRIEGHE ADDVVATLME 180
  181 QAVQRGYRAV IASPDKDFKQ LISENVQIVI PLADLRRWSF YTLKHYHAQY NCDPQSDLSF 240
  241 RCIMGDEVDG VPGIQHMVPA FGRKTAMKLV RKHGSLESLL SAAAVRTVGR PYAQEALTKY 300
  301 ADYLRRNYQV LALNRDVRVQ IQNEWLMERD TSNDSEVLSS FFSTLHG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..347] PSI-BLAST 74.69897 STRUCTURE OF TAQ DNA POLYMERASE


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle