YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186488278, gi...
Organism:	Arabidopsis thaliana
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186488278, gi....

Description	E-value	Query Range	Subject Range
gi\|114322007, gi... - gi\|78702619\|ref\|ZP_00867050.1\| DNA polymerase A [Alkalilimnicola ehrlichei MLHE-1], gi\|78519889\|gb\|E...	311.0	[0..53]	[346..1]
gi\|110835520, gi... - gi\|110835520\|ref\|YP_694379.1\| DNA polymerase I [Alcanivorax borkumensis SK2], gi\|110648631\|emb\|CAL18...	311.0	[0..23]	[346..14]
DPO1_BACCA - DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1	310.0	[0..56]	[345..1]
gi\|38146965 - gi\|38146965\|gb\|AAR11867.1\| DNA polymerase I [Bacillus caldolyticus]	309.0	[0..56]	[345..3]
gi\|56421265, gi\|... - gi\|56421265\|ref\|YP_148583.1\| DNA polymerase I [Geobacillus kaustophilus HTA426], gi\|56381107\|dbj\|BAD...	308.0	[0..56]	[345..3]
gi\|53757056, gi\|... - gi\|53803295\|ref\|YP_114980.1\| DNA polymerase I [Methylococcus capsulatus str. Bath], gi\|53757056\|gb\|A...	307.0	[0..52]	[346..2]
gi\|37524397, gi\|... - gi\|37524397\|ref\|NP_927741.1\| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1], gi\|3...	305.0	[0..58]	[346..7]
gi\|238713473, gi... - gi\|77956893\|ref\|ZP_00820967.1\| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains ...	305.0	[0..52]	[346..1]
gi\|77960492, gi\|... - gi\|77960492\|ref\|ZP_00824361.1\| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains ...	305.0	[0..52]	[346..1]
gi\|1205984 - gi\|1205984\|gb\|AAB52611.1\| DNA polymerase I gi\|196249912, gi... - gi\|196249912\|ref\|ZP_03148607.1\| DNA polymerase I [Geobacillus sp. G11MC16], gi\|196210426\|gb\|EDY05190...	304.0	[0..56]	[345..1]

Back

Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVGFIQPN SLFSFSTKSI DKTQPSRTKW VSSSSSSFSS HSSVETFHRT GNVQVLQKDV  60
   61 LCGNNEEIRK KNKRVFFLDV SPLCYEGNKP SSQAFGHWIS LFFSQVSLTD PVIAVIDGEE 120
  121 GNQRRRELLP SYKAHRKSPN HGRYSKRPHQ FVDEVLRKCN VPVVRIEGHE ADDVVATLME 180
  181 QAVQRGYRAV IASPDKDFKQ LISENVQIVI PLADLRRWSF YTLKHYHAQY NCDPQSDLSF 240
  241 RCIMGDEVDG VPGIQHMVPA FGRKTAMKLV RKHGSLESLL SAAAVRTVGR PYAQEALTKY 300
  301 ADYLRRNYQV LALNRDVRVQ IQNEWLMERD TSNDSEVLSS FFSTLHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1taqA
Description:	STRUCTURE OF TAQ DNA POLYMERASE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits