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Protein Overview: gi|16128226|ref|...

General Information:
Name(s) found: gi|1786435|gb|AAC73344.1| [nr-271106-contam.fasta]
gi|16128226|ref|NP_414775.1| [nr-271106-contam.fasta]
gi|16128226|ref|NP_414775.1|: [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
Description(s) found:
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  • DNA-binding transcriptional regulator [Escherichia coli K12] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] [Ecoli-contam-Dam1-Mind-COMA-MBP-110.fasta]
  • sigma factor-binding protein, stimulates RNA polymerase holoenzyme formation [Escherichia coli str. K-12 substr. MG1655] [c_elegans-WS236-ecoli-05Mar2013-contam.fasta]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 133 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: transcription [IEA]
    positive regulation of transcription [IEA]
    Molecular Function: sigma factor activity [IEA]
    protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPSGHPKS RLIKKFTALG PYIREGKCKD NRFFFDCLAV CVNVKPAPEV REFWGWWMEL  60
   61 EAQESRFTYS YQFGLFDKAG DWKSVPVKDT EVVERLEHTL REFHEKLREL LTTLNLKLEP 120
  121 ADDFRDEPVK LTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] Pfam 99.677781 No description for PF07417.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle