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Protein Overview: EG10912

General Information:
Name(s) found: rpsM / EG10912 [EcoGene]
Description(s) found:
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  • 30S ribosomal subunit protein S13 / 30S ribosomal subunit protein S13 [EcoGene]
  • 30S ribosomal subunit protein S13 [Escherichia coli] [nr-271106-contam.fasta]
  • 30S ribosomal protein S13 [Escherichia coli K12] [nr-271106-contam.fasta]
  • 30S ribosomal subunit protein S13 [Escherichia coli K12] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • 30S ribosomal subunit protein S13 [Escherichia coli str. K-12 substr. MG1655] [Ecoli-contam-Dam1-Mind-COMA-MBP-110.fasta]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 118 amino acids

    Gene Ontology:
    Cellular Component: cytosolic small ribosomal subunit [IDALink to PubMed article]
    Biological Process: translation [IDALink to PubMed article][IEA]
    Molecular Function: nucleic acid binding [IEA]
    RNA binding [IEA]
    structural constituent of ribosome [IDALink to PubMed article][IEA]
    rRNA binding [IEA]
    tRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIAGINIP DHKHAVIALT SIYGVGKTRS KAILAAAGIA EDVKISELSE GQIDTLRDEV  60
   61 AKFVVEGDLR REISMSIKRL MDLGCYRGLR HRRGLPVRGQ RTKTNARTRK GPRKPIKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..118] PSI-BLAST 40.69897 No description for 1vs5M was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.75987008608357 bayes_pls_golite062009
  • structural molecule activity
    		•  9.18430883932738 bayes_pls_golite062009
  • catalytic activity
    		•  0.161830442565647 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle