YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: EG11856

General Information:
Name(s) found: fdoI / EG11856 [EcoGene]
Description(s) found:
SHOW ONLY BEST
  • formate dehydrogenase-O, cytochrome b556 subunit / Formate dehydrogenase-O cytochrome b556 subunit, aerobic [EcoGene]
  • formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli K12] [nr-271106-contam.fasta]
  • formate dehydrogenase-O gamma subunit [Escherichia coli] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli str. K-12 substr. MG1655] [Ecoli-contam-Dam1-Mind-COMA-MBP-110.fasta]
    • Organism: Escherichia coli str. K-12 substr. MG1655
    Length: 211 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    integral to membrane [IEA]
    plasma membrane [IEA]
    formate dehydrogenase complex [IEA]
    Biological Process: respiratory electron transport chain [IEA]
    cellular respiration [IEA]
    electron transport chain [IEA]
    transport [IEA]
    Molecular Function: oxidoreductase activity [IEA]
    metal ion binding [IEA]
    iron ion binding [IEA]
    electron carrier activity [IEA]
    formate dehydrogenase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRDTIVRY TAPERINHWI TAFCFILAAV SGLGFLFPSF NWLMQIMGTP QLARILHPFV  60
   61 GVVMFASFII MFFRYWHHNL INRDDIFWAK NIRKIVVNEE VGDTGRYNFG QKCVFWAAII 120
  121 FLVLLLVSGV IIWRPYFAPA FSIPVIRFAL MLHSFAAVAL IVVIMVHIYA ALWVKGTITA 180
  181 MVEGWVTSAW AKKHHPRWYR EVRKTTEKKA E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..211] PSI-BLAST 37.0 Formate dehydrogenase N, cytochrome (gamma) subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  12.0031413212101 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  6.74953039117709 bayes_pls_golite062009
  • oxidoreductase activity
    		•  6.50321219171766 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  6.34988495153085 bayes_pls_golite062009
  • ubiquinol-cytochrome-c reductase activity
    		•  4.50524595323325 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor
    		•  4.50524595323325 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  4.29455986972274 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  4.14658254808421 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors
    		•  4.11558350750273 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  3.50341532760587 bayes_pls_golite062009
  • electron carrier activity
    		•  3.28715047874253 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  3.24971217721974 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  3.0416933490072 bayes_pls_golite062009
  • catalytic activity
    		•  1.19342057724506 bayes_pls_golite062009
  • binding
    		•  1.00930558921984 bayes_pls_golite062009
  • protein binding
    		•  0.588939203772891 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.173080554590997 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.0890676728517352 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle