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Protein Overview: XCT_ARATH

General Information:
Name(s) found: XCT_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 337 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of photomorphogenesis [IMP]
    response to blue light [IMP]
    regulation of circadian rhythm [IMP]
    response to red light [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGMGDGYVG TAQDAVRIRR LQKQREAERK KIQELKSKSA SGNDQSGLLQ FGTSSCEILD  60
   61 TAFKKETVGL VTREEYVEKR VNIRNKFEEE EKEKLQKLQQ EEEELQLEKR NKKRKIKGSS 120
  121 RLSFAEDFEN GSDEDDGENK SSGTGNLRCG KLGKDPSVET NFLPDSEREA EEQAERERLK 180
  181 KQWLREQEQI KNEPLEITYS YWDGTGHRRV IQVRKGDPIG NFLRAVQQQL APDFREIRTA 240
  241 SVENLLYVKE DLIIPHQHSF YELIINKARG KSGPLFHFDV HEDVRTIADA TIEKDESHAG 300
  301 KVVERHWYEK NKHIFPASRW EIYDPTKKWE RYTVHGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] PSI-BLAST 12.69897 Heavy meromyosin subfragment
    2 View Details [240..337] Pfam 19.958607 No description for PF04921.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle