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Protein Overview: gi|30688588, gi|...

General Information:
Name(s) found: gi|51536572 [NCBI NR]
gi|30688588 [NCBI NR]
Description(s) found:
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  • gi|51536572|gb|AAU05524.1| At3g26990 [Arabidopsis thaliana] [NCBI NR]
  • gi|30688588|ref|NP_189335.2| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • At3g26990 [Arabidopsis thaliana]gi|30688588|ref|NP_189335.2| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49056.1); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain Protein of unknown fu [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g26990 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49056.1); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain Protein of unknown function DUF618 (InterPro:IPR006903); contains InterPro domain Regulation of nuclear pre-mRNA protein (InterPro:IPR006569) | chr3:9949663-9952794 REVERSE [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | ENTH/VHS family protein | chr3:9948426-9951557 REVERSE LENGTH=513 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g26990 OS=Arabidopsis thaliana GN=At3g26990 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 513 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY  60
   61 LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF GRKSARRLVN IWEERKVFGS 120
  121 RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL 180
  181 VGKSTNAAGY LEKATQEVER DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL 240
  241 ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI 300
  301 KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY 360
  361 VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD QSYLSPHHQN TATTSSSTPP 420
  421 QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST 480
  481 TSAPSENSYQ KFQGQDGFYG INSSVPITPV TRQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 14.39794 Heavy meromyosin subfragment
    2 View Details [380..513] MSA 4.315996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle