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Protein Overview: gi|23506077, gi|...

General Information:
Name(s) found: gi|30681834 [NCBI NR]
gi|23506077 [NCBI NR]
gi|14532456 [NCBI NR]
Description(s) found:
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  • gi|30681834|ref|NP_563875.3| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|23506077|gb|AAN28898.1| At1g10640/F20B24_8 [Arabidopsis thaliana] [NCBI NR]
  • gi|14532456|gb|AAK63956.1| At1g10640/F20B24_8 [Arabidopsis thaliana] [NCBI NR]
  • At1g10640/F20B24_8 [Arabidopsis thaliana]gi|14532456|gb|AAK63956.1| At1g10640/F20B24_8 [Arabidopsis thaliana]gi|30681834|ref|NP_563875.3| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | polygalacturonase, putative / pectinase, putative | chr1:3515479-3516932 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g10640/F20B24_8 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 380 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVPPEYTYL VGPISFSGPY CQANIVFQLD GTIIAPTDSK TWGKGLMWWI DFTKLKGIKV  60
   61 QGKGVIDGRG SGWWQQDSPF IDSDTKLIVP LNNSANQNPP MPIRSELDER MPSIKPTALR 120
  121 FSGSFGVEVT GITIQNSPQC HLKFDDCVGV VVHDIAVSSP GDSPNTDGIH LQNTKDVLIH 180
  181 STTLACGDDC ISIQTGCSNV FVHNVNCGPG HGISIGSLGK EGTKACVSNI TVRDVAMHNT 240
  241 MTGVRIKTWQ GGVGSVKGII FSNIQLNQVQ IPITINQFYC DHSKCKNQTS AVAVEGVTYE 300
  301 RIKGTYTVKP VHFACSDNFP CVDVQLSSIE LKPVQEKYRM YDAYCWQTFG ELNTPTLPPI 360
  361 DCLKIGKPPR NKVQSDHDVC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..380] PSI-BLAST 41.69897 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle