YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: LDL1_ARATH

General Information:
Name(s) found: LDL1_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|75161368|sp|Q8VXV7.1|LDL1_ARATH RecName: Full=Lysine-specific histone demethylase 1 homolog 1; AltName: Full=Flavin-containing amine oxidase domain-containing protein 1; AltName: Full=Protein LSD1-LIKE 1 [NCBI NR]
  • gi|23505983|gb|AAN28851.1| At1g62830/F23N19_19 [Arabidopsis thaliana] [NCBI NR]
  • gi|18377829|gb|AAL67101.1| At1g62830/F23N19_19 [Arabidopsis thaliana] [NCBI NR]
  • gi|15221606|ref|NP_176471.1| LDL1 (LSD1-LIKE1); amine oxidase/ electron carrier/ oxidoreductase [Arabidopsis thaliana] [NCBI NR]
  • Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1 [Swiss-Prot]
  • At1g62830/F23N19_19 [Arabidopsis thaliana]gi|18377829|gb|AAL67101.1| At1g62830/F23N19_19 [Arabidopsis thaliana]gi|15221606|ref|NP_176471.1| amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: LDL1 | LDL1 (LSD1-LIKE1); amine oxidase | chr1:23268303-23270837 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g62830/F23N19_19 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • amine oxidase/ oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • LDL1 (LSD1-LIKE1); amine oxidase/ electron carrier/ oxidoreductase [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-like 1 | chr1:23264638-23267172 REVERSE LENGTH=844 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 844 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: root development [IMP]
    histone deacetylation [IMP]
    histone H3-K4 methylation [IMP]
    Molecular Function: oxidoreductase activity [IEA]
    electron carrier activity [IEA]
    amine oxidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS  60
   61 EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL GEEESSDLVT EQQSQNPNAA 120
  121 EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE 180
  181 ANVVSIIGGK DQANYIVVRN HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE 240
  241 HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP 300
  301 GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE 360
  361 LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG EALETFRLVY GVAEDQQERM 420
  421 LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG 480
  481 STVESIRYGS NGVLVYTGNK EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF 540
  541 GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE 600
  601 RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD 660
  661 DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA ANILRVARRR ASSSALNPNQ 720
  721 ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG 780
  781 LWLYGLVTRK QAIELGEMDG DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR 840
  841 QIFD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] MSA 4.062996 View MSA. No confident structure predictions are available.
    2 View Details [84..147] PSI-BLAST 23.221849 Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain
    3 View Details [148..724] PSI-BLAST 61.30103 No description for 2v1dA was found.
    4 View Details [725..844] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle