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Protein Overview: gi|51317418, gi|...

General Information:
Name(s) found: gi|51317418 [NCBI NR]
gi|22330883 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|51317418|gb|AAN03631.2|AF409086_1 Rab escort protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22330883|ref|NP_187306.2| GDP dissociation inhibitor family protein / Rab GTPase activator family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 563 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein transport [ISS]
    regulation of GTPase activity [IEA]
    intracellular protein transport [IEA]
    Molecular Function: Rab GDP-dissociation inhibitor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD  60
   61 LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY SSVEISSFES EILEEHSRRF 120
  121 NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK 180
  181 SLTLLEKNQL MKFFKLVQSH LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI 240
  241 ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ 300
  301 AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL 360
  361 SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV SNALVVYPPK SLFPEQLTAI 420
  421 RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND 480
  481 TSETKPILLW RALYVQELVK GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF 540
  541 KEETSPAENT TEEENDGGVE IED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..563] PSI-BLAST 98.221849 GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR, ALPHA-ISOFORM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small GTPase regulator activity
    		•  1.82777033221452 bayes_pls_golite062009
  • binding
    		•  1.71679209220564 bayes_pls_golite062009
  • GTPase regulator activity
    		•  1.69589677829425 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  1.67690582043816 bayes_pls_golite062009
  • transporter activity
    		•  1.29839290134235 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.27958088282173 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.26584665095879 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.07862908893913 bayes_pls_golite062009
  • catalytic activity
    		•  1.03127962968326 bayes_pls_golite062009
  • DNA binding
    		•  1.02814395937345 bayes_pls_golite062009
  • enzyme regulator activity
    		•  1.00883251592654 bayes_pls_golite062009
  • transcription factor activity
    		•  0.569299976584703 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.556967966402473 bayes_pls_golite062009
  • GDP-dissociation inhibitor activity
    		•  0.387378304822822 bayes_pls_golite062009
  • protein binding
    		•  0.347133050347128 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.31459693204333 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle