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Protein Overview: gi|49258688, gi|...

General Information:
Name(s) found: gi|49258689 [NCBI NR]
gi|49258688 [NCBI NR]
gi|49258687 [NCBI NR]
gi|49258686 [NCBI NR]
gi|49258685 [NCBI NR]
gi|49258684 [NCBI NR]
gi|27461255 [NCBI NR]
Description(s) found:
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  • gi|49258689|pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With 1,2-Propanediol Bound [NCBI NR]
  • gi|49258688|pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With 1,2-Propanediol Bound [NCBI NR]
  • gi|49258687|pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [NCBI NR]
  • gi|49258686|pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [NCBI NR]
  • gi|49258685|pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [NCBI NR]
  • gi|49258684|pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [NCBI NR]
  • gi|27461255|gb|AAM54728.1| glycerol dehydratase [Clostridium butyricum] [NCBI NR]
  • glycerol dehydratase [Clostridium butyricum]gi|49258689|pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With 1,2-Propanediol Boundgi|49258688|pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With 1,2-Pr [nrdb_11152004_Chlamydomonas]
  • Chain A, Native Structure Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [nr-271106-contam.fasta]
  • Chain B, Glycerol Bound Form Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [nr-271106-contam.fasta]
  • Chain B, Native Structure Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [nr-271106-contam.fasta]
  • glycerol dehydratase [Clostridium butyricum] [nr-271106-contam.fasta]
  • Chain B, Structure Of The B12-Independent Glycerol Dehydratase With 1,2-Propanediol Bound [nr-271106-contam.fasta]
  • Chain A, Glycerol Bound Form Of The B12-Independent Glycerol Dehydratase From Clostridium Butyricum [nr-271106-contam.fasta]
  • Chain A, Structure Of The B12-Independent Glycerol Dehydratase With 1,2-Propanediol Bound [nr-271106-contam.fasta]
    • Organism: Clostridium butyricum
    Length: 787 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKGFSTQT ERINILKAQI LNAKPCVESE RAILITESFK QTEGQPAILR RALALKHILE  60
   61 NIPITIRDQE LIVGSLTKEP RSSQVFPEFS NKWLQDELDR LNKRTGDAFQ ISEESKEKLK 120
  121 DVFEYWNGKT TSELATSYMT EETREAVNCD VFTVGNYYYN GVGHVSVDYG KVLRVGFNGI 180
  181 INEAKEQLEK NRSIDPDFIK KEKFLNSVII SCEAAITYVN RYAKKAKEIA DNTSDAKRKA 240
  241 ELNEIAKICS KVSGEGAKSF YEACQLFWFI HAIINIESNG HSISPARFDQ YMYPYYENDK 300
  301 NITDKFAQEL IDCIWIKLND INKVRDEIST KHFGGYPMYQ NLIVGGQNSE GKDATNKVSY 360
  361 MALEAAVHVK LPQPSLSVRI WNKTPDEFLL RAAELTREGL GLPAYYNDEV IIPALVSRGL 420
  421 TLEDARDYGI IGCVEPQKPG KTEGWHDSAF FNLARIVELT INSGFDKNKQ IGPKTQNFEE 480
  481 MKSFDEFMKA YKAQMEYFVK HMCCADNCID IAHAERAPLP FLSSMVDNCI GKGKSLQDGG 540
  541 AEYNFSGPQG VGVANIGDSL VAVKKIVFDE NKITPSELKK TLNNDFKNSE EIQALLKNAP 600
  601 KFGNDIDEVD NLAREGALVY CREVNKYTNP RGGNFQPGLY PSSINVYFGS LTGATPDGRK 660
  661 SGQPLADGVS PSRGCDVSGP TAACNSVSKL DHFIASNGTL FNQKFHPSAL KGDNGLMNLS 720
  721 SLIRSYFDQK GFHVQFNVID KKILLAAQKN PEKYQDLIVR VAGYSAQFIS LDKSIQNDII 780
  781 ARTEHVM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..787] PSI-BLAST 1000.0 Native structure of the B12-independent glycerol dehydratase from clostridium butyricum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.95058695475279 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor
    		•  1.72563679072631 bayes_pls_golite062009
  • formate C-acetyltransferase activity
    		•  1.48261557970472 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH or CH2 groups
    		•  1.43559439297918 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.42705638794743 bayes_pls_golite062009
  • ribonucleoside-diphosphate reductase activity
    		•  1.37298861502572 bayes_pls_golite062009
  • C-acyltransferase activity
    		•  0.0923196663496405 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle