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Protein Overview: gi|110743660, gi...

General Information:
Name(s) found: gi|42567721 [NCBI NR]
gi|30102672 [NCBI NR]
gi|110743660 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|42567721|ref|NP_196357.2| forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30102672|gb|AAP21254.1| At5g07400 [Arabidopsis thaliana] [NCBI NR]
  • gi|110743660|dbj|BAE99667.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1084 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: DNA repair [IEA]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [IEA]
    phosphoric diester hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRQCEKVV IRIHNIGTPL ISGSSGLPLE LFHIQSDRPY TIGRSSSDGF CDFVIDHSSI  60
   61 SRKHCQILFD SQSHKLYIFD GVIHLPSGSF SQVYDEFRRR LVGVEDLGNL KFRASLNGVY 120
  121 VNRVRVRKSK VQEVSIDDEV LFFCGKEGLC CKDGRVGFVV QEIVFEGRDA SIVSVSSGHS 180
  181 RGTFSSGKRS KRVFAPMENE INSPVSGFYP PKAVGVVERV NSLVSYCRHI LKSDDPLSCL 240
  241 RLSIISHSGK ECLSCCTSKM FRSKVGIVAD DRGVKSAEIN HDMGHGLSGL RLSIERPNSN 300
  301 LHVDRRLGVS DLISEIENEF AACTFISDKT RTMLPFDGEK VNTPDITCIN KEKSYQSSLQ 360
  361 APGKNFYLNR LQYIEQSSTG CQRVVSLPEL LHPVESIQQI FLATFTSDIL WFLTCCDTPR 420
  421 HLPVTIACHN AERCWSSNPD ARTAVPLPNY PNVTMVYPPF PEEIAFGKDR TNRGIACHHP 480
  481 KLFILQRKDS IRVIITSANL VARQWNDVTN TVWWQDFPRR ADPDLLSLFG HCQRETNHGL 540
  541 KPDFCAQLAG FAASLLTDVP SQAHWILEFT KYNFEHSAGH LVASVPGIHS YKPSYLTESG 600
  601 CSNTIFSEEF LGSVEASVVG LSYLFRSAND STGAQLKRLA SYIRRTRENS LGMLELVLRR 660
  661 NTNVPADPNA VRVLVPNPDD DSRDDFVQLG FLPRSIAKWV SPLWDIGFFK FVGYVYRDEV 720
  721 LGAASCRSNE KVQLVLHVLQ GVSISDMSKL IQPYHVVALC SLIASLQRCT GIWRLQEVLG 780
  781 RYKWPESQES DFVYSASSIG GSATTGFQAD FSSAAGKKAL QHFDSQESDP EWGCWSNREE 840
  841 REAPSIKIIF PTIERVKNGH HGVLSSRRLL CFSEKTWQKW RHSNVLHDAV PNPQDRVGHP 900
  901 MHIKVARRLF TSTRGSRSSS FGWVYSGSHN FSAAAWGQTI SRSSRNNQDQ SNNAIRAVKK 960
  961 LRVCNYELGI VFVFPPPHEE TDSCEGSKID DIVLPFVVPA PKYGWSDKPA TGLAMREAFA1020
 1021 EFREGSTSFC GESEVEEEVE EEEEEEADAE GRGEFVAEEE KQEEEAYAEA LWSQVESSSS1080
 1081 SLSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] Pfam 13.79588 No description for PF00498.18 was found. No confident structure predictions are available.
    2 View Details [182..278] deduced N/A No confident structure predictions are available.
    3 View Details [279..768] PSI-BLAST 50.69897 Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase
    4 View Details [769..1084] PSI-BLAST 102.0 human Tyrosyl DNA phosphodiesterase


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.44

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle