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Protein Overview: gi|30683629, gi|...

General Information:
Name(s) found: gi|30683629 [NCBI NR]
gi|30102666 [NCBI NR]
gi|110743444 [NCBI NR]
Description(s) found:
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  • gi|30683629|ref|NP_172869.2| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30102666|gb|AAP21251.1| At1g14170 [Arabidopsis thaliana] [NCBI NR]
  • gi|110743444|dbj|BAE99608.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • At1g14170 [Arabidopsis thaliana]gi|30683629|ref|NP_172869.2| KH domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | KH domain-containing protein | chr1:4843460-4845250 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g14170 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA-binding KH domain-containing protein | chr1:4843463-4845253 REVERSE LENGTH=454 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g14170 OS=Arabidopsis thaliana GN=At1g14170 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9XI71, At1g14170 OS=Arabidopsis thaliana GN=At1g14170 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 454 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLRNIHD QNVIASEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRINEALPG  60
   61 CEERVVTMYS TNEELNHFGD DGELVCPALD ALFKVHDMVV ADADQDDGTD DDNDLGEKQT 120
  121 VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP 180
  181 LVVREALYQV ASLLHDNPSR FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD 240
  241 AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE 300
  301 DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA 360
  361 NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR LRANSFDMDH GLVLLPTSFP 420
  421 YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..224] PSI-BLAST 27.30103 No description for 2annA was found.
    2 View Details [225..325] FFAS03 3.1 Solution structure of KH domain in FUSE binding protein 1
    3 View Details [326..454] PSI-BLAST 11.045757 HnRNP K, KH3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.03452983014063 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.262255208405772 bayes_pls_golite062009
  • RNA binding
    		•  0.11909109768676 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  1.17976146460016 bayes_pls_golite062009
  • RNA binding
    		•  0.531188561533869 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.517453257444565 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle