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Protein Overview: PGLR5_ARATH

General Information:
Name(s) found: PGLR5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75332048|sp|Q94AJ5.1|PGLR5_ARATH RecName: Full=Probable polygalacturonase At1g80170; Short=PG; AltName: Full=Pectinase At1g80170; Flags: Precursor [NCBI NR]
  • gi|23296942|gb|AAN13206.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|18412685|ref|NP_565232.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|15028105|gb|AAK76676.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 [Swiss-Prot]
  • putative polygalacturonase [Arabidopsis thaliana]gi|15028105|gb|AAK76676.1| putative polygalacturonase [Arabidopsis thaliana]gi|18412685|ref|NP_565232.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | polygalacturonase, putative / pectinase, putative | chr1:30158538-30160575 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 444 amino acids

    Gene Ontology:
    Cellular Component: plant-type cell wall [IDA]
    Biological Process: carbohydrate metabolic process [IEA]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA  60
   61 KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP IDLSGPCKAR LTLQISGTII 120
  121 APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL 180
  181 TFHKCKNMRV ENLNVIDSQQ MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI 240
  241 DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD 300
  301 TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS 360
  361 FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD GFTESFCWEA YGSSSGQVYP 420
  421 PPCLSDDTSF LEQSVQSGIT SAYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..444] PSI-BLAST 39.045757 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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