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Protein Overview: PRP38_ARATH

General Information:
Name(s) found: PRP38_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana GN=PRP38 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 355 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA processing [ISS]
    Molecular Function: binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRTDPLAK NIRGTNPQNL VEKIVRTKIY QHTFWKEQCF GLTAETLVDK AMELDHLGGT  60
   61 FGGSRKPTPF LCLILKMLQI QPEKEIVVEF IKNDDYKYVR ILGAFYLRLT GTDVDVYRYL 120
  121 EPLYNDYRKV RQKLSDGKFS LTHVDEVIEE LLTKDYSCDI AMPRLKKRWT LEQNGLLEPR 180
  181 KSVLEDDFEE EEEKEENEGI ADGSEDEMDQ RRKSPERERE RDRDRRRDSH RHRDRDYDRD 240
  241 YDMDRDHDRD YERERGHGRD RDRERDRDHY RERDRDRERG RDRERDRRDR ARRRSRSRSR 300
  301 DRKRHETDDV RDREEPKKKK EKKEKMKEDG TDHPNPEIAE MNRLRASLGM KPLRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] Pfam 63.958607 No description for PF03371.6 was found. No confident structure predictions are available.
    2 View Details [203..355] MSA 9.131997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle