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Protein Overview: gi|21554742, gi|...

General Information:
Name(s) found: gi|88193818 [NCBI NR]
gi|21554742 [NCBI NR]
gi|18408968 [NCBI NR]
Description(s) found:
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  • gi|88193818|gb|ABD42998.1| At1g68185 [Arabidopsis thaliana] [NCBI NR]
  • gi|21554742|gb|AAM63677.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|18408968|ref|NP_564924.1| ubiquitin-related [Arabidopsis thaliana] [NCBI NR]
  • unknown [Arabidopsis thaliana]gi|18408968|ref|NP_564924.1| ubiquitin-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ubiquitin-related | chr1:25560205-25561836 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g68185 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ubiquitin-like superfamily protein | chr1:25556542-25558173 FORWARD LENGTH=215 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g68185 OS=Arabidopsis thaliana GN=At1g68185 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 215 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein modification process [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGEGEDLEP LFDYRRVQPA NFVCIDDDDD DASVTPIPKK AKTSQTVEKL DDDVKVIEVT  60
   61 GDDDWLLPPP KVIFDKSKDS VEDSTIKALR SKKMELMSFT KTVGDVMQEV EESAKREVEE 120
  121 SRNPSSETAA QLPSEPTNDR AKIVITIQDK DGQKTLRVFA DEKFERVIKL YTDKAKLDPQ 180
  181 NLVFIFDGDK IDPSTTPSEL GMEDHDMIEV HTKKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] deduced N/A No confident structure predictions are available.
    2 View Details [121..215] PSI-BLAST 35.0 Solution Structure of Human SUMO-2 (SMT3B), a Ubiquitin-like Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle