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Protein Overview: BH054_ARATH

General Information:
Name(s) found: BH054_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75301354|sp|Q8LEG1.1|BH054_ARATH RecName: Full=Transcription factor bHLH54; AltName: Full=Transcription factor EN 114; AltName: Full=bHLH transcription factor bHLH054; AltName: Full=Basic helix-loop-helix protein 54; Short=bHLH 54; Short=AtbHLH54 [NCBI NR]
  • gi|225897974|dbj|BAH30319.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21553570|gb|AAM62663.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|18396475|ref|NP_564293.1| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] [NCBI NR]
  • Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1 [Swiss-Prot]
  • unknown [Arabidopsis thaliana]gi|18396475|ref|NP_564293.1| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Basic helix-loop-helix (bHLH) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | basic helix-loop-helix (bHLH) family protein | chr1:9654740-9655793 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RSL4 | root hair defective 6-like 4 | chr1:9654753-9655806 FORWARD LENGTH=258 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 258 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: positive regulation of transcription [IMP]
    root hair initiation [IMP]
    regulation of transcription [TAS]
    cell growth [IMP]
    response to auxin stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA  60
   61 FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL LDVENLCKTN SNCDVTRQEL 120
  121 AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL 180
  181 YARKRREKIN ERLKTLQNLV PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL 240
  241 AYNGLDMGFH HNLLSRLM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] deduced N/A No confident structure predictions are available.
    2 View Details [172..258] PSI-BLAST 14.39794 Myc prot-oncogene protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.12507195426228 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43204604575196 bayes_pls_golite062009
  • DNA binding
    		•  0.40884226851256 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.31759335140578 bayes_pls_golite062009
  • transcription factor activity
    		•  0.09721565916723 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle