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Protein Overview: gi|30685025, gi|...

General Information:
Name(s) found: gi|30685025 [NCBI NR]
gi|22136666 [NCBI NR]
Description(s) found:
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  • gi|30685025|ref|NP_193756.2| terpene synthase/cyclase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22136666|gb|AAM91652.1| putative terpene cyclase [Arabidopsis thaliana] [NCBI NR]
  • putative terpene cyclase [Arabidopsis thaliana]gi|30685025|ref|NP_193756.2| terpene synthase/cyclase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Terpene synthase/cyclase family protein, vetispiradiene synthase, Hyoscyamus muticus, PATX:G763421 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | terpene synthase/cyclase family protein | chr4:10924252-10926761 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative terpene cyclase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:10924242-10926751 REVERSE LENGTH=609 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 609 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: metabolic process [IEA]
    Molecular Function: magnesium ion binding [IEA]
    lyase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMEATSVFR PKLGSQFSLP STTNLFPLRK LYGFPLTSFP GKPIKRIRLK ATNTLTFDDK  60
   61 ERTRKFKKLP LSEWTHYFHS IPLDISEMDA LKEEIDELKP KVKNTFMSSQ GSDSTKTKIL 120
  121 MIYLFVSLGL AYHFEEEIYE TLKEGFENIE KIMAGEEDLY TVSIIFWVFR RYGHYISSDV 180
  181 FQRFKGSNGS FKESLIGDAK GMLSLYEAAH LATTKDYILD EALIFTSSHL ETLVATGTCP 240
  241 PHLLARIRNA LSICQHWNFE VLVPLDFIPF YEQEKDHDEM LLKFAKLSFK YLKLIYLQDL 300
  301 KILTKWYKKL DFPSKFPPYF KDRCVENYFF VLPVFFEPQL SSARMLLTKG FILLGIQDDT 360
  361 FDRYASISEA ESLGNSLKRW APDHSMDKQP EYLKSVLKVI LDTFQEFEKE LSPEGRSYSV 420
  421 KYTIEEFQAS SKANVELAKW AQVSHVPSFE KYMEVGQMEI TACVTVAYIL MSMGKTGTKE 480
  481 AFEWLKSRPK LVQSLCTKGR LMNDIAGFED DMSRGYVVNA VNCYMKQYGV TEKEAFKELR 540
  541 KMVVNTHKTL NEEFLTTTCV SHYVLRETMD FARMIIVTYN GYEGFTRPDE GKIEEYMTSL 600
  601 FVDHTLKML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..609] PSI-BLAST 1000.0 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.87397377711135 bayes_pls_golite062009
  • transferase activity
    		•  1.34929557841705 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.22586398285056 bayes_pls_golite062009
  • prenyltransferase activity
    		•  0.302854173865421 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle