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View Structure Prediction Details

Protein: gi|30685025, gi|...
Organism: Arabidopsis thaliana
Length: 609 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30685025, gi|....

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
687.0 [0..53] [605..11]

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Predicted Domain #1
Region A:
Residues: [1-609]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMEATSVFR PKLGSQFSLP STTNLFPLRK LYGFPLTSFP GKPIKRIRLK ATNTLTFDDK  60
   61 ERTRKFKKLP LSEWTHYFHS IPLDISEMDA LKEEIDELKP KVKNTFMSSQ GSDSTKTKIL 120
  121 MIYLFVSLGL AYHFEEEIYE TLKEGFENIE KIMAGEEDLY TVSIIFWVFR RYGHYISSDV 180
  181 FQRFKGSNGS FKESLIGDAK GMLSLYEAAH LATTKDYILD EALIFTSSHL ETLVATGTCP 240
  241 PHLLARIRNA LSICQHWNFE VLVPLDFIPF YEQEKDHDEM LLKFAKLSFK YLKLIYLQDL 300
  301 KILTKWYKKL DFPSKFPPYF KDRCVENYFF VLPVFFEPQL SSARMLLTKG FILLGIQDDT 360
  361 FDRYASISEA ESLGNSLKRW APDHSMDKQP EYLKSVLKVI LDTFQEFEKE LSPEGRSYSV 420
  421 KYTIEEFQAS SKANVELAKW AQVSHVPSFE KYMEVGQMEI TACVTVAYIL MSMGKTGTKE 480
  481 AFEWLKSRPK LVQSLCTKGR LMNDIAGFED DMSRGYVVNA VNCYMKQYGV TEKEAFKELR 540
  541 KMVVNTHKTL NEEFLTTTCV SHYVLRETMD FARMIIVTYN GYEGFTRPDE GKIEEYMTSL 600
  601 FVDHTLKML

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle