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Protein Overview: gi|22136814, gi|...

General Information:
Name(s) found: gi|22327662 [NCBI NR]
gi|22136814 [NCBI NR]
gi|20258821 [NCBI NR]
Description(s) found:
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  • gi|22327662|ref|NP_680409.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22136814|gb|AAM91751.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20258821|gb|AAM14020.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|20258821|gb|AAM14020.1| unknown protein [Arabidopsis thaliana]gi|22327662|ref|NP_680409.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr5:19970896-19973100 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr5:19953670-19955874 FORWARD LENGTH=449 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glycoside hydrolase family 28 protein / polygalacturonase (Pectinase) family protein OS=Arabidopsis thaliana GN=At5g49215 PE=2 SV=1 [ARATH-contam.fasta]
  • Pectin lyase-like superfamily protein OS=Arabidopsis thaliana GN=At5g49215 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 449 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVSVALVLL LTLSSVILIN GRSYGVGNIC DRGRRPSERP HSVKITDFGA VGDGKTLNTL  60
   61 AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL FLEKDAVILA SQDPSHWQVT 120
  121 DALPSYGRGI DLPGKRYMSL INGDMLHDVV VTGDNGTIDG QGLVWWDRFN SHSLEYSRPH 180
  181 LVEFVSAENV IVSNLTFLNA PAYTIHSVYC RNLYIHRVTA NTCPESPYTI GIVPDSSENV 240
  241 CIQESSINMG YDAISLKSGC DEYGLSYARP TANVQIRNVY LRAASGSSIS FGSEMSGGIS 300
  301 DVEVSDAHIH NSLSGIAFRT TNGRGGYIKE IDISNIHMVN VGTAFLANGS FGTHPDSGFD 360
  361 ENAYPLVSHI RLHDIVGENI STAGYFFGTK ESPFTSILLS NISLSIKNSA SPADSWQCSY 420
  421 VDGSSEFVVP EPCLELKSFD SYYGRAEAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..449] PSI-BLAST 52.39794 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle