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Protein Overview: gi|22327003, gi|...

General Information:
Name(s) found: gi|22327003 [NCBI NR]
gi|21281231 [NCBI NR]
gi|17979295 [NCBI NR]
Description(s) found:
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  • gi|22327003|ref|NP_197704.2| peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21281231|gb|AAM44993.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17979295|gb|AAL49873.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|17979295|gb|AAL49873.1| unknown protein [Arabidopsis thaliana]gi|22327003|ref|NP_197704.2| peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr5:7781478-7783336 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Peptidoglycan-binding LysM domain-containing protein | chr5:7781475-7783333 FORWARD LENGTH=397 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Peptidoglycan-binding LysM domain-containing protein OS=Arabidopsis thaliana GN=At5g23130 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 397 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cell wall macromolecule catabolic process [IEA][ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP  60
   61 SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL VTDLQMFALE SLRIPLPGRH 120
  121 PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY 180
  181 GLKPKNRRAS EGFGMAVYKN EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN 240
  241 QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL 300
  301 RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT 360
  361 SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..131] PSI-BLAST 10.0 No description for 2djpA was found.
    2 View Details [132..276] PSI-BLAST 6.045757 No description for 2gu1A was found.
    3 View Details [277..397] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle